View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_51 (Length: 312)
Name: NF0593_low_51
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 37844870 - 37844739
Alignment:
| Q |
77 |
ccaataatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgat |
176 |
Q |
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| T |
37844870 |
ccaataatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgat |
37844771 |
T |
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| Q |
177 |
aatacaaggattgttgaaggtgcatatattgg |
208 |
Q |
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| T |
37844770 |
aatacaaggattgttgaaggtgcatatattgg |
37844739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 37837379 - 37837332
Alignment:
| Q |
76 |
tccaataatatagtgatcatttaggttctctgtagcctccaaaactag |
123 |
Q |
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| T |
37837379 |
tccaataatatactgatcatttaggttctctgtagcctccaaaactag |
37837332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 37843004 - 37842947
Alignment:
| Q |
76 |
tccaataatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagg |
133 |
Q |
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| T |
37843004 |
tccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaagg |
37842947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 37850718 - 37850678
Alignment:
| Q |
77 |
ccaataatatagtgatcatttaggttctctgtagcctccaa |
117 |
Q |
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| T |
37850718 |
ccaataatataccgatcatttaggttctcagtagcctccaa |
37850678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 36866080 - 36866040
Alignment:
| Q |
77 |
ccaataatatagtgatcatttaggttctctgtagcctccaa |
117 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaa |
36866040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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