View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_54 (Length: 301)
Name: NF0593_low_54
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_54 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 28552219 - 28552499
Alignment:
| Q |
35 |
aatactttcgactatcgtcttttctgtgtcagtgcatcacttcaagaataaatagtacgcacatcataaaatgtattaccttgttgaaccaacaatagt- |
133 |
Q |
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| T |
28552219 |
aatactttcgactatcgtcttttctgtgtcagtgcatcacttcaagaataaatagtacgcatatcataaaatgtattaccttgttgaaccaacaatagtg |
28552318 |
T |
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| Q |
134 |
----------gcagaattagtgcataattactttaattaaaaaataacttcataagtcgttctcacatccgcttaacattacgctacttaagaaatattg |
223 |
Q |
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| T |
28552319 |
cagaattagtgcagaattagtgcataattactttaattaaaaaataacttcataagtcgttctcacatccgcttaacactacgctacttaagaaatattg |
28552418 |
T |
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| Q |
224 |
agt--tgttaactcaattttggagtcgacttaaattatgacttcat-aaatctattatgattaacaggtttaaaagtcctc |
301 |
Q |
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| T |
28552419 |
agttgtgttaactcaattttgaagtcgacttaaaatatgacttcttaaaatctattatgattaatagatttaaaagtcctc |
28552499 |
T |
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