View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_57 (Length: 295)
Name: NF0593_low_57
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 29291993 - 29291739
Alignment:
| Q |
12 |
tattctattgtattgacaaatcacaatgtataacaggaaggtaaattataaagaataacgatatttgtgtttgtgcatatctctatccaagaaattaatg |
111 |
Q |
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| T |
29291993 |
tattctattgtattgacaaatcacaatgtataacaggaaggtaaattataaagaataacgatatttgtgtttgtgcatatctctatccaagaaattaatg |
29291894 |
T |
|
| Q |
112 |
aatgttagaaacaagcaatatcacctttgcaagtgacaatattgtgaaagtgaaactattcgattaatgctctattgttattaaccaatcgattactcat |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
29291893 |
aatgttagaaacaagcaatatcacctttacaagtgacaatattgtgaaagtgaaactattcgattaatgttctactgttattaaccaatcgattactcat |
29291794 |
T |
|
| Q |
212 |
ttgcagcctagatgataagcatttggttgaaaagccgagagttcgggcttgtaat |
266 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29291793 |
ttgcagcctagatgataagcatttggttgaaaagctgagagttcgggcttgtaat |
29291739 |
T |
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