View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_59 (Length: 288)

Name: NF0593_low_59
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_59
NF0593_low_59
[»] chr4 (17 HSPs)
chr4 (75-283)||(12715404-12715609)
chr4 (10-68)||(55827293-55827351)
chr4 (19-70)||(2734177-2734228)
chr4 (21-71)||(55762927-55762977)
chr4 (1-66)||(2871541-2871606)
chr4 (14-70)||(48514591-48514647)
chr4 (1-64)||(12276863-12276926)
chr4 (14-61)||(54235278-54235325)
chr4 (1-67)||(4423192-4423258)
chr4 (21-71)||(12276817-12276867)
chr4 (26-72)||(21606057-21606103)
chr4 (38-68)||(54009984-54010014)
chr4 (22-71)||(18508881-18508930)
chr4 (14-63)||(24980681-24980730)
chr4 (14-58)||(3249695-3249739)
chr4 (22-62)||(30848656-30848696)
chr4 (19-67)||(40391257-40391305)
[»] chr1 (6 HSPs)
chr1 (1-71)||(3739811-3739881)
chr1 (1-69)||(29855101-29855169)
chr1 (19-77)||(3739875-3739933)
chr1 (22-76)||(19758335-19758389)
chr1 (21-65)||(35310315-35310359)
chr1 (14-70)||(24023980-24024036)
[»] chr2 (24 HSPs)
chr2 (1-70)||(31469114-31469183)
chr2 (19-77)||(31469062-31469120)
chr2 (14-71)||(10459263-10459320)
chr2 (10-70)||(41099030-41099090)
chr2 (14-68)||(33829389-33829443)
chr2 (21-71)||(41374592-41374642)
chr2 (14-71)||(29291120-29291177)
chr2 (14-66)||(16180491-16180543)
chr2 (2-70)||(16564420-16564488)
chr2 (1-71)||(944814-944884)
chr2 (1-71)||(10459309-10459379)
chr2 (1-71)||(17437169-17437239)
chr2 (14-70)||(2884254-2884310)
chr2 (14-62)||(7932749-7932797)
chr2 (1-61)||(18007506-18007566)
chr2 (22-69)||(14781919-14781966)
chr2 (1-72)||(38935359-38935430)
chr2 (1-67)||(43398881-43398947)
chr2 (22-71)||(2949039-2949088)
chr2 (10-63)||(11386361-11386414)
chr2 (1-70)||(24037582-24037651)
chr2 (1-62)||(43398844-43398905)
chr2 (4-44)||(19924350-19924390)
chr2 (22-70)||(38935427-38935475)
[»] chr5 (13 HSPs)
chr5 (1-71)||(39030606-39030676)
chr5 (14-71)||(34252714-34252771)
chr5 (19-76)||(39030555-39030612)
chr5 (19-70)||(33669988-33670039)
chr5 (1-71)||(38958058-38958128)
chr5 (1-66)||(33669929-33669994)
chr5 (21-71)||(9956561-9956611)
chr5 (21-63)||(42324943-42324985)
chr5 (1-71)||(2424435-2424505)
chr5 (19-69)||(29960471-29960521)
chr5 (14-71)||(2424494-2424551)
chr5 (1-62)||(2884071-2884132)
chr5 (22-70)||(42708580-42708628)
[»] chr7 (10 HSPs)
chr7 (1-71)||(16866398-16866468)
chr7 (9-80)||(3719864-3719936)
chr7 (22-72)||(6803303-6803353)
chr7 (1-71)||(27147594-27147664)
chr7 (19-58)||(16866462-16866501)
chr7 (1-67)||(5026141-5026207)
chr7 (1-68)||(18731990-18732057)
chr7 (1-63)||(44816472-44816534)
chr7 (10-59)||(40376785-40376834)
chr7 (14-70)||(18732046-18732101)
[»] chr3 (7 HSPs)
chr3 (18-77)||(46829040-46829099)
chr3 (21-68)||(46829105-46829152)
chr3 (1-70)||(32221468-32221537)
chr3 (1-63)||(32221513-32221575)
chr3 (14-62)||(40905808-40905856)
chr3 (14-64)||(47783082-47783132)
chr3 (14-62)||(31280161-31280209)
[»] chr6 (9 HSPs)
chr6 (19-62)||(28756663-28756706)
chr6 (22-65)||(31323817-31323860)
chr6 (1-71)||(28004620-28004690)
chr6 (1-71)||(30531221-30531291)
chr6 (1-67)||(31323857-31323923)
chr6 (10-71)||(9675759-9675820)
chr6 (24-67)||(14446697-14446740)
chr6 (20-66)||(28004685-28004731)
chr6 (21-62)||(7549781-7549822)
[»] scaffold2113 (1 HSPs)
scaffold2113 (1-71)||(574-643)
[»] chr8 (7 HSPs)
chr8 (10-71)||(11114288-11114349)
chr8 (1-68)||(29111002-29111069)
chr8 (23-70)||(35901100-35901147)
chr8 (22-66)||(7974850-7974894)
chr8 (14-55)||(13209977-13210018)
chr8 (1-61)||(10076460-10076520)
chr8 (19-71)||(29818285-29818337)
[»] scaffold0034 (1 HSPs)
scaffold0034 (10-51)||(94998-95039)
[»] scaffold0027 (1 HSPs)
scaffold0027 (19-64)||(13178-13223)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 283
Target Start/End: Original strand, 12715404 - 12715609
Alignment:
Q  75 tataatatagcactaattaattccttaattttgatacatgtataagtttagaatataacaaaagttgggataaaatttgctaaatctcaacaatacaata 174  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12715404 tataaaatagcactaattaattccttaattttaatacatgtataagtttagaatataacaaaagttgggataaaatctgctaaatctcaacaatacaata 12715503  T
Q  175 taattcaaaaataagaacaaaaagagcacaacttacatggataataatatgtttgtttggctaccggcttttattttagggaaatgttaacgggtgctcc 274  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||   |||||||||||||||||||    
T  12715504 taattcaaaaataagaacaaaaagagcacaacttacatgg---ataatatgtttgttcggctaccggcttttattttaaaaaaatgttaacgggtgctcc 12715600  T
Q  275 tatgatact 283  Q
    |||||||||    
T  12715601 tatgatact 12715609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 55827293 - 55827351
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacg 68  Q
    |||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  55827293 aaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacg 55827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2734228 - 2734177
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacgga 2734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 55762927 - 55762977
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  55762927 caaatatattaacttttgttgaccaatttttgtttatattttgggacggag 55762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2871541 - 2871606
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttggga 66  Q
    ||||||| |||||||| ||| |||||||| |||||| ||| ||| |||||||||||||||||||||    
T  2871541 atttggtcaaaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttggga 2871606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 48514591 - 48514647
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||| |||||||||||||||||| |||||| |||||||| ||||||| || ||||||    
T  48514591 tttggaccaaatacattaacttttgttgactaatttttgtttatattgtgagacgga 48514647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12276863 - 12276926
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgg 64  Q
    ||||| || ||||||| ||| |||||||| |||||  ||||||| |||||||||||||||||||    
T  12276863 atttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttgg 12276926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 54235278 - 54235325
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattt 61  Q
    |||| |||||||||||||||||| ||||| ||||||||| ||||||||    
T  54235278 tttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4423192 - 4423258
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    ||||| || |||||||||||||||||||| |||||   |||| | ||||||||||| ||||||||||    
T  4423192 atttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttgggac 4423258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12276867 - 12276817
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||| | |||||||| ||| |||||||||| ||||||||    
T  12276867 caaatacattaacttttgctgaccaatctttacttatattttaggacggag 12276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 21606057 - 21606103
Alignment:
Q  26 acattaactttcgttgaccaatttttgcttatattttgggacggagt 72  Q
    ||||||||||| | ||||||  |||||||||||||||||||||||||    
T  21606057 acattaacttttgctgaccacattttgcttatattttgggacggagt 21606103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 54010014 - 54009984
Alignment:
Q  38 gttgaccaatttttgcttatattttgggacg 68  Q
    |||||||||||||||||||||||||||||||    
T  54010014 gttgaccaatttttgcttatattttgggacg 54009984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 18508881 - 18508930
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||||||||||| ||||||||||||| ||||  ||||||||| ||||    
T  18508881 aaatacattaacttttgttgaccaattttcgcttccattttgggatggag 18508930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 24980681 - 24980730
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 63  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||| ||||||    
T  24980681 tttgtacaaaatacattaatttttgttgacaaatttttgcttacattttg 24980730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 3249739 - 3249695
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttata 58  Q
    |||| |||||||||||||||||| || ||||||||||| ||||||    
T  3249739 tttgaaccaaatacattaacttttgtcgaccaatttttacttata 3249695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 30848656 - 30848696
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  30848656 aaatacattaatttttgttgaccaatttttgcttacatttt 30848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40391305 - 40391257
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    |||||||||||||| ||| ||||| | |||||| |||||||||||||||    
T  40391305 accaaatacattaatttttgttgatcgatttttacttatattttgggac 40391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3739881 - 3739811
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3739881 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 3739811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29855101 - 29855169
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgg 69  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  29855101 atttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatattttaggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 3739875 - 3739933
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggagtagtat 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  3739875 accaaatacattaacttttgttgaccaatttttgcttatattttaggacggagtagtat 3739933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 19758335 - 19758389
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacggagtagta 76  Q
    ||||||||||||||| |||||||||||||| ||||||||||  ||||||| ||||    
T  19758335 aaatacattaacttttgttgaccaatttttacttatattttatgacggagaagta 19758389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 35310315 - 35310359
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttggg 65  Q
    |||||||||||| ||| |||||||||||||| |||||||||||||    
T  35310315 caaatacattaatttttgttgaccaatttttacttatattttggg 35310359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 24023980 - 24024036
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||| |||| ||||||||||||| ||||| ||||||||  ||||||||| |||||||    
T  24023980 tttgaaccacatacattaacttttgttgatcaattttttgttatattttaggacgga 24024036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31469114 - 31469183
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31469114 atttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 31469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 31469120 - 31469062
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggagtagtat 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31469120 accaaatacattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 31469062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 10459320 - 10459263
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10459320 tttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggag 10459263  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 41099030 - 41099090
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||| |||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttggaacgga 41099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 33829443 - 33829389
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacg 68  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  33829443 tttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacg 33829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 41374592 - 41374642
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  41374592 caaatacattaactttcgttgactaatttttacttatattttgagacggag 41374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 29291120 - 29291177
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| |||||||| |||||||||  |||||||||||||||||| ||||||||||||||    
T  29291120 tttgaaccaaatatattaacttttattgaccaatttttgcttacattttgggacggag 29291177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 16180491 - 16180543
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttggga 66  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  16180491 tttgaaccaaatacattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 16564420 - 16564488
Alignment:
Q  2 tttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||| |||||||||||||||||||| |||||  ||||||  |||||| |||| |||||||||||||    
T  16564420 tttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacgga 16564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 944814 - 944884
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| ||| |||||||||||||||||||| |||||  |||||| ||||||| |||| |||||| |||||||    
T  944814 atttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggag 944884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10459309 - 10459379
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||| |||||||||| || || ||| |||||  |||||||||| |||||||| ||||||||||||||    
T  10459309 atttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgggacggag 10459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17437169 - 17437239
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||  ||| |||| || ||||||||||| ||| |||||| |||||||| ||||||||||||||||||    
T  17437169 atttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacggag 17437239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 2884310 - 2884254
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||| |||||||||||||| ||| |||||| ||||||| |||||||||| |||||||    
T  2884310 tttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacgga 2884254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 7932797 - 7932749
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||| ||||||||| |||||||| |||||| ||||||||||||||||||    
T  7932797 tttgaaccaaatacgttaacttttgttgactaatttttgcttatatttt 7932749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18007566 - 18007506
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattt 61  Q
    |||||||  ||||||||||||||||| || ||||||| |||| ||||||||| ||||||||    
T  18007566 atttggtccaaaatttgtaccaaatatatcaactttctttgatcaatttttgtttatattt 18007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 14781966 - 14781919
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacgg 69  Q
    ||||||||||||||||||| | |||||||| |||||||||| ||||||    
T  14781966 aaatacattaactttcgttaatcaatttttacttatattttaggacgg 14781919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38935430 - 38935359
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggagt 72  Q
    |||| ||| ||||| |||| ||||||||| |||||  ||||||  |||||||||||||||||||||| ||||    
T  38935430 attttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttgggacagagt 38935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43398881 - 43398947
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    |||||||  ||| |||| |||||||||||||||||| ||| || |||||||| ||| ||||||||||    
T  43398881 atttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttgggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 2949088 - 2949039
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||||| |||| ||| ||||||||||||||| |||||| |||||||    
T  2949088 aaatacattagcttttgttaaccaatttttgcttacattttgagacggag 2949039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 11386361 - 11386414
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 63  Q
    |||||||||| ||||||||| |||||  ||||| ||| ||||||||||||||||    
T  11386361 aaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24037651 - 24037582
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||| ||| ||||||||||||||||| || |||||  ||||||  ||||||||||| ||||| |||||||    
T  24037651 attttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacgga 24037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43398905 - 43398844
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||||||| |||||||||||||||||||| |||||   |||||| |||||| |||| |||||    
T  43398905 atttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 19924350 - 19924390
Alignment:
Q  4 tggttaaaaatttgtaccaaatacattaactttcgttgacc 44  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  19924350 tggttcaaaatttgtaccaaatacatcaacttacgttgacc 19924390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 38935427 - 38935475
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||||||||||| |||||  |||||||| ||||||||| |||||||    
T  38935427 aaatacattaacttttgttgagtaatttttgtttatatttttggacgga 38935475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39030606 - 39030676
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  39030606 atttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttgggatggag 39030676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 34252771 - 34252714
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  34252771 tttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggag 34252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39030612 - 39030555
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggagtagta 76  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  39030612 accaaatacattaacttttgttgaccaatttttgcttatattttagaacggagtagta 39030555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 33669988 - 33670039
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  33669988 accaaatacattaactttttttgaccaatttttgcttacattttgggacgga 33670039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38958128 - 38958058
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||  |||||||| |||||||||||||||||| ||| | |||||||| |||||||||||| ||||||    
T  38958128 atttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggag 38958058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33669994 - 33669929
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttggga 66  Q
    |||||||| ||||||||||||| ||||| ||||||  ||||||| ||||||||||| |||||||||    
T  33669994 atttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttggga 33669929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 9956561 - 9956611
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||||||||||    
T  9956561 caaatacattaacttttgttaaccaatttttacttacattttgggacggag 9956611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 42324943 - 42324985
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttg 63  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  42324943 caaatacattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2424505 - 2424435
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||| ||||||||||||| |||||| | |||  ||| || |||||||||||||||||| | ||||||    
T  2424505 atttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatattttagcacggag 2424435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 29960471 - 29960521
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacgg 69  Q
    |||||||||||||||||| |||| | |||||||| ||| ||||||||||||    
T  29960471 accaaatacattaacttttgttgtctaatttttgtttacattttgggacgg 29960521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2424494 - 2424551
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| ||||||| ||||    
T  2424494 tttgaaccaaatacattaacttttatcgaccaatttttgtttataatttgggatggag 2424551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2884071 - 2884132
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    ||||| || ||||||||||  ||||||||||| |||  ||||||||||||| ||||||||||    
T  2884071 atttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatatttt 2884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 42708628 - 42708580
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    ||||||||||||||| |||||  ||||||||| |||||||| |||||||    
T  42708628 aaatacattaacttttgttgattaatttttgcgtatattttaggacgga 42708580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16866468 - 16866398
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  16866468 atttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggatggag 16866398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3719936 - 3719864
Alignment:
Q  9 aaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggagt-agtataat 80  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| | |||||||||||| ||||| ||||||||    
T  3719936 aaaaatttgaaccaaatacactaactttagttgaccaatttttacatatattttgggatggagtgagtataat 3719864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 6803353 - 6803303
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttgggacggagt 72  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  6803353 aaatacattaacttttgttgaccaaattttgcttatattttgggacagagt 6803303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27147664 - 27147594
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| ||| |||||||||| |||||||||||||||| |||||| ||||||| |||||||||| | ||||||    
T  27147664 atttagtttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatattttagaacggag 27147594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 16866462 - 16866501
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttata 58  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  16866462 accaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5026207 - 5026141
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    |||||||  ||| |||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  5026207 atttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18732057 - 18731990
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacg 68  Q
    |||||||| ||||||| ||||| |||||| || ||  ||||| | |||||||||||||||||||||||    
T  18732057 atttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44816534 - 44816472
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 63  Q
    |||||||  ||| |||| |||||||||||||||||| |||| |||||||||| ||| ||||||    
T  44816534 atttggtacaaattttgaaccaaatacattaacttttgttggccaatttttgtttacattttg 44816472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40376785 - 40376834
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatat 59  Q
    |||||||| ||||||| ||| ||||| | |||||||||||||||||||||    
T  40376785 aaaatttggaccaaattcataaacttcctttgaccaatttttgcttatat 40376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18732046 - 18732101
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||| ||||||||||||||||||  ||||||||||||| |||| ||||| |||||||    
T  18732046 tttgaaccaaatacattaacttttattgaccaattttt-cttacattttaggacgga 18732101  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 46829099 - 46829040
Alignment:
Q  18 taccaaatacattaactttcgttgaccaatttttgcttatattttgggacggagtagtat 77  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  46829099 taccaaatacattgacttttgttgaccaatttttgcttatattttaggacggaatagtat 46829040  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 46829105 - 46829152
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatattttgggacg 68  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  46829105 caaatacattaacttttgttgaccaatttttgcttatattttaggacg 46829152  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32221537 - 32221468
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||||||| |||||||||||||||||||| || ||  | ||| ||||||||||||| |||||||||||||    
T  32221537 atttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacgga 32221468  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32221513 - 32221575
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 63  Q
    |||||||  ||| |||| |||||||||||||||||| |||||| |||||||||||| ||||||    
T  32221513 atttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 40905856 - 40905808
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| |||||    
T  40905856 tttgaaccaaataaattaacttttgttgaccaatttttgcttacatttt 40905808  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 47783132 - 47783082
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgg 64  Q
    |||| ||||||||||||||||||  ||||||||||||| |||| |||||||    
T  47783132 tttgaaccaaatacattaactttttttgaccaatttttacttacattttgg 47783082  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 31280209 - 31280161
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||| |||||||||||||| ||| ||||| |||||||| ||||||||||    
T  31280209 tttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 28756706 - 28756663
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28756706 accaaatacattaactttcgttgaccaaattttgcttatatttt 28756663  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 31323860 - 31323817
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttggg 65  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  31323860 aaatacattaacttttgttgaccaatttttgcttacattttggg 31323817  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28004690 - 28004620
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||| | ||||||||||||||||||||||| ||| |||| |||| || |||||||| ||||| ||||||    
T  28004690 atttggctcaaaatttgtaccaaatacattaatttttgttggccaaattatgcttatactttggaacggag 28004620  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30531221 - 30531291
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||||||| ||| |||||||||||||||| |||||  |||||   ||||||||||| ||||||||||||||    
T  30531221 atttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggag 30531291  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31323857 - 31323923
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    |||| ||| ||||||||||||| |||||| |||||  ||||||| ||||||||||| ||||||||||    
T  31323857 attttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgggac 31323923  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 9675820 - 9675759
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||||||||| || ||| |||||  ||||||||||||||||||| |||||| |||||||    
T  9675820 aaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggag 9675759  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 14446740 - 14446697
Alignment:
Q  24 atacattaactttcgttgaccaatttttgcttatattttgggac 67  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||    
T  14446740 atacattaacttttgttgaccaacttttgcttacattttgggac 14446697  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28004685 - 28004731
Alignment:
Q  20 ccaaatacattaactttcgttgaccaatttttgcttatattttggga 66  Q
    ||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  28004685 ccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 7549822 - 7549781
Alignment:
Q  21 caaatacattaactttcgttgaccaatttttgcttatatttt 62  Q
    |||||||||||||||| ||  |||||||||||||||||||||    
T  7549822 caaatacattaacttttgtacaccaatttttgcttatatttt 7549781  T

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Target: scaffold2113 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 643 - 574
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    |||| ||| ||||||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  643 atttagttcaaaatttgtaccaaataaattaacttttgtt-accaaattttgcttatactttgggacggag 574  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 11114288 - 11114349
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||| |||||||||||| |||||  ||||| |||||||| |||||||||||||||||||    
T  11114288 aaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacggag 11114349  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29111002 - 29111069
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacg 68  Q
    |||||||  ||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||| ||||    
T  29111002 atttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttgagacg 29111069  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 35901100 - 35901147
Alignment:
Q  23 aatacattaactttcgttgaccaatttttgcttatattttgggacgga 70  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  35901100 aatacattaacttttgttgacctatttttgcttatattttaggacgga 35901147  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 7974850 - 7974894
Alignment:
Q  22 aaatacattaactttcgttgaccaatttttgcttatattttggga 66  Q
    |||||||||||||||  |||||||||||||| |||||||||||||    
T  7974850 aaatacattaacttttattgaccaatttttgtttatattttggga 7974894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 13210018 - 13209977
Alignment:
Q  14 tttgtaccaaatacattaactttcgttgaccaatttttgctt 55  Q
    |||| |||||||||||||||||| ||||| ||||||||||||    
T  13210018 tttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10076460 - 10076520
Alignment:
Q  1 atttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattt 61  Q
    |||||||| ||| |||| |||| |||||| |||||||  |||||||||||| |||||||||    
T  10076460 atttggttcaaattttggaccatatacatcaactttctctgaccaatttttccttatattt 10076520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 29818337 - 29818285
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 71  Q
    ||||||||||| ||||||| |||||| |||||||| |||| ||||| ||||||    
T  29818337 accaaatacatcaactttctttgacccatttttgcctataatttggaacggag 29818285  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 94998 - 95039
Alignment:
Q  10 aaaatttgtaccaaatacattaactttcgttgaccaattttt 51  Q
    |||||||||||||||||||| |||||  ||||||||||||||    
T  94998 aaaatttgtaccaaatacatcaacttatgttgaccaattttt 95039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 13223 - 13178
Alignment:
Q  19 accaaatacattaactttcgttgaccaatttttgcttatattttgg 64  Q
    |||||||||||||||||| ||||| | ||||||||||| |||||||    
T  13223 accaaatacattaacttttgttgatccatttttgcttacattttgg 13178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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