View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_6 (Length: 562)
Name: NF0593_low_6
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 39 - 435
Target Start/End: Original strand, 47916642 - 47917048
Alignment:
| Q |
39 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
138 |
Q |
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| T |
47916642 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
47916741 |
T |
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| Q |
139 |
ttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatg---- |
234 |
Q |
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| T |
47916742 |
ttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaccccatttcgcgcgtgggacatgctcattcatggtttatgctgc |
47916841 |
T |
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| Q |
235 |
ctctacgtgccaaaaccc-------attatctctactctacaacattgtgtggtaagtcgaaatgtttttgatctccaaatctgtttttgttgcgtgatt |
327 |
Q |
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| T |
47916842 |
ctctacgtgccaaaacccagaaaggattatctctactctacaacattgtgtggtaagtcgaaatg-ttttcatctccaaatctgtttttgttgcgtgatt |
47916940 |
T |
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| Q |
328 |
catagattttgcaatgtgggtcatgtgggtaagactattgaggttgttgaattgatgaatgagtatagaaagcattacccttttgatgattttgtttgta |
427 |
Q |
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| T |
47916941 |
catagattttgcaatgtgggtcatgtgggtaaggctattgaggttgttgaattgatgaatgagtatagaaaggattacccttttgatgattttgtttgta |
47917040 |
T |
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| Q |
428 |
gctctgtg |
435 |
Q |
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| T |
47917041 |
gctctgtg |
47917048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 157 - 435
Target Start/End: Complemental strand, 16348317 - 16348032
Alignment:
| Q |
157 |
caaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatgctctacgtgccaaaaccca--- |
253 |
Q |
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| T |
16348317 |
caaccaagcagaacaattcatgatgcaaaatccacacaccccatttggcgcgtgggacatgctcattcatggtttatgctccacgcgcgaaaacccagaa |
16348218 |
T |
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| Q |
254 |
----ttatctctactctacaacattgtgtggtaagtcgaaat-gt-ttttgatctccaaatctgttttt-gttgcgtgattcatagattttgcaatgtgg |
346 |
Q |
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| T |
16348217 |
aggattctctctgttctgcgacattgcttggtaaa---aaatcgtctttttatctcaaaaattgttttttgttgcgtgattcagagattttgcaatgtgg |
16348121 |
T |
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| Q |
347 |
gtcatgtgggtaagactattgaggttgttgaattgatgaatgagtatagaaagcattacccttttgatgattttgtttgtagctctgtg |
435 |
Q |
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| T |
16348120 |
gtcatgtgggtaaggctattgaggttgttgaattgatgaatgagtatagaaaggattacccttttgatgattttgtttgtagttctgtg |
16348032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 11782619 - 11782520
Alignment:
| Q |
39 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
138 |
Q |
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| T |
11782619 |
tgaagctttttgtgaagcttgttgatttcagagagaacatcttcctgatctttccttaaccgatccaattccttcgaattctccaaaattgaaacaatgt |
11782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 517 - 562
Target Start/End: Complemental strand, 19581270 - 19581225
Alignment:
| Q |
517 |
ggatgcatgtttgttattgtggtgcttaatttttgttgaaccatca |
562 |
Q |
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| T |
19581270 |
ggatgcatgtttgttattgtggagcttaaattttgttgaaccatca |
19581225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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