View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_60 (Length: 288)

Name: NF0593_low_60
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_60
NF0593_low_60
[»] chr4 (16 HSPs)
chr4 (75-283)||(12715404-12715609)
chr4 (1-68)||(55827284-55827351)
chr4 (1-71)||(55762907-55762977)
chr4 (1-61)||(54235265-54235325)
chr4 (1-72)||(21606030-21606103)
chr4 (19-70)||(2734177-2734228)
chr4 (17-67)||(40391257-40391307)
chr4 (1-67)||(54010026-54010092)
chr4 (1-70)||(4423147-4423216)
chr4 (6-62)||(30848640-30848696)
chr4 (4-58)||(3249695-3249749)
chr4 (1-71)||(12276817-12276887)
chr4 (24-70)||(23151596-23151642)
chr4 (4-76)||(4479622-4479694)
chr4 (22-66)||(30848592-30848636)
chr4 (32-68)||(54009984-54010020)
[»] chr2 (21 HSPs)
chr2 (1-77)||(31469062-31469138)
chr2 (7-71)||(10459263-10459327)
chr2 (1-63)||(944776-944838)
chr2 (1-71)||(17437169-17437239)
chr2 (4-62)||(41912123-41912182)
chr2 (24-70)||(31469137-31469183)
chr2 (1-67)||(43398881-43398947)
chr2 (10-66)||(16180487-16180543)
chr2 (1-68)||(44726825-44726892)
chr2 (9-67)||(15660702-15660760)
chr2 (13-71)||(29291119-29291177)
chr2 (7-68)||(33829389-33829450)
chr2 (1-70)||(38935406-38935475)
chr2 (10-62)||(7932749-7932801)
chr2 (1-69)||(19924303-19924371)
chr2 (1-70)||(16564376-16564443)
chr2 (6-63)||(35311232-35311290)
chr2 (1-71)||(41374572-41374642)
chr2 (24-69)||(14781919-14781964)
chr2 (11-71)||(2949039-2949099)
chr2 (14-42)||(27280020-27280048)
[»] chr1 (11 HSPs)
chr1 (1-77)||(3739857-3739933)
chr1 (1-66)||(29855060-29855125)
chr1 (1-71)||(30693332-30693402)
chr1 (9-70)||(24023975-24024036)
chr1 (24-69)||(29855124-29855169)
chr1 (19-71)||(3739811-3739863)
chr1 (1-76)||(19758314-19758389)
chr1 (1-62)||(47543605-47543666)
chr1 (10-65)||(35310304-35310359)
chr1 (1-67)||(5056337-5056403)
chr1 (7-64)||(3694036-3694093)
[»] chr5 (27 HSPs)
chr5 (1-76)||(39030555-39030630)
chr5 (4-70)||(33669973-33670039)
chr5 (1-71)||(38958058-38958128)
chr5 (10-71)||(34252714-34252775)
chr5 (2-70)||(42708580-42708648)
chr5 (1-71)||(14646405-14646475)
chr5 (1-63)||(42324923-42324985)
chr5 (1-62)||(26746239-26746299)
chr5 (1-62)||(26835273-26835334)
chr5 (19-71)||(39030624-39030676)
chr5 (4-71)||(2424484-2424551)
chr5 (10-71)||(9956550-9956611)
chr5 (10-66)||(25467158-25467214)
chr5 (1-83)||(20185356-20185438)
chr5 (1-76)||(33498353-33498428)
chr5 (4-70)||(5727714-5727779)
chr5 (16-50)||(11507888-11507922)
chr5 (16-50)||(11515259-11515293)
chr5 (16-50)||(11522661-11522695)
chr5 (16-50)||(11530073-11530107)
chr5 (1-51)||(26730097-26730147)
chr5 (1-62)||(19644441-19644502)
chr5 (1-62)||(30293382-30293443)
chr5 (6-70)||(4576877-4576941)
chr5 (11-51)||(12002769-12002809)
chr5 (24-68)||(12619685-12619729)
chr5 (10-70)||(16500555-16500615)
[»] chr7 (13 HSPs)
chr7 (1-72)||(6803303-6803374)
chr7 (5-58)||(16866448-16866501)
chr7 (24-71)||(16866398-16866445)
chr7 (1-63)||(3719920-3719982)
chr7 (1-67)||(5026141-5026207)
chr7 (1-63)||(44816472-44816534)
chr7 (1-68)||(18731990-18732057)
chr7 (4-70)||(18732036-18732101)
chr7 (6-71)||(1554883-1554948)
chr7 (24-60)||(4259371-4259408)
chr7 (1-62)||(30794447-30794508)
chr7 (1-70)||(47967911-47967980)
chr7 (7-63)||(3769802-3769858)
[»] scaffold0027 (1 HSPs)
scaffold0027 (6-64)||(13178-13236)
[»] chr3 (10 HSPs)
chr3 (4-62)||(31280161-31280219)
chr3 (1-63)||(32221513-32221575)
chr3 (1-64)||(26914492-26914555)
chr3 (19-77)||(46829040-46829098)
chr3 (24-68)||(46829108-46829152)
chr3 (4-62)||(40905808-40905866)
chr3 (7-64)||(47783082-47783139)
chr3 (1-70)||(32221468-32221537)
chr3 (21-69)||(15282638-15282686)
chr3 (34-66)||(21383778-21383810)
[»] chr6 (14 HSPs)
chr6 (4-65)||(31323817-31323878)
chr6 (1-66)||(28004666-28004731)
chr6 (28-71)||(7343311-7343354)
chr6 (1-68)||(9829891-9829958)
chr6 (1-70)||(8437817-8437886)
chr6 (10-67)||(14446697-14446754)
chr6 (4-68)||(31522654-31522717)
chr6 (17-62)||(28756663-28756708)
chr6 (1-70)||(33822286-33822355)
chr6 (1-70)||(35003757-35003826)
chr6 (1-69)||(8215204-8215272)
chr6 (19-71)||(9675759-9675811)
chr6 (1-65)||(30531181-30531245)
chr6 (19-67)||(31323875-31323923)
[»] chr8 (9 HSPs)
chr8 (7-55)||(13209977-13210025)
chr8 (1-68)||(29111002-29111069)
chr8 (10-62)||(8777775-8777827)
chr8 (19-71)||(11114297-11114349)
chr8 (6-70)||(35901083-35901147)
chr8 (1-67)||(33557818-33557884)
chr8 (1-66)||(7974829-7974894)
chr8 (24-62)||(44080741-44080779)
chr8 (1-62)||(9548092-9548153)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-64)||(28171-28234)
[»] scaffold2113 (1 HSPs)
scaffold2113 (1-66)||(619-684)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-62)||(18291-18351)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-51)||(37928-37978)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-62)||(35946-36007)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-62)||(94952-95013)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 283
Target Start/End: Original strand, 12715404 - 12715609
Alignment:
Q  75 tataatatagcactaattaattccttaattttgatacatgtataagtttagaatataacaaaagttgggataaaatttgctaaatctcaacaatacaata 174  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12715404 tataaaatagcactaattaattccttaattttaatacatgtataagtttagaatataacaaaagttgggataaaatctgctaaatctcaacaatacaata 12715503  T
Q  175 taattcaaaaataagaacaaaaagagcacaacttacatggataataatatgtttgtttggctaccggcttttattttagggaaatgttaacgggtgctcc 274  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||   |||||||||||||||||||    
T  12715504 taattcaaaaataagaacaaaaagagcacaacttacatgg---ataatatgtttgttcggctaccggcttttattttaaaaaaatgttaacgggtgctcc 12715600  T
Q  275 tatgatact 283  Q
    |||||||||    
T  12715601 tatgatact 12715609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 55827284 - 55827351
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  55827284 atttgctacaaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacg 55827351  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 55762907 - 55762977
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||| ||||||||||||| || ||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  55762907 atttgctacaaatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttgggacggag 55762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 54235265 - 54235325
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattt 61  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||    
T  54235265 atttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21606030 - 21606103
Alignment:
Q  1 atttggtacaaattttt--aaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagt 72  Q
    |||||||||| ||||||  ||||||| ||||||||||||| ||| ||  |||||||||||||||||||||||||    
T  21606030 atttggtacatattttttgaaccagacacattaacttttgctgaccacattttgcttatattttgggacggagt 21606103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2734228 - 2734177
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||| |||||||||||||||||||  ||||||| ||||||||||||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacgga 2734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 40391307 - 40391257
Alignment:
Q  17 taaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||||||||||    
T  40391307 taaccaaatacattaatttttgttgatcgatttttacttatattttgggac 40391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 54010026 - 54010092
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    |||||||| ||||||| || || ||||||||| ||||||| || |||||||||||||||| ||||||    
T  54010026 atttggtataaattttgaatcaaatacattaagttttgtttataaatttttgcttatattgtgggac 54010092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4423216 - 4423147
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||||||||||||||| || || ||| ||||| |||| ||||||||||||  |||||||||||| |||||    
T  4423216 atttggtacaaattttgaatcaaatatattaatttttattgatcaattttcacttatattttggtacgga 4423147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 30848640 - 30848696
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||||||||| ||| | ||||||||| ||||||||| ||||||||||||| |||||    
T  30848640 gtacaaattttgaacaaaatacattaatttttgttgaccaatttttgcttacatttt 30848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 3249749 - 3249695
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttata 58  Q
    ||||| ||||||| ||||| |||||||||||||||| || |||||||| ||||||    
T  3249749 tggtataaattttgaaccaaatacattaacttttgtcgaccaatttttacttata 3249695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12276887 - 12276817
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| ||| ||||||| || || ||||||||||||||| ||| |||| ||| |||||||||| ||||||||    
T  12276887 atttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatattttaggacggag 12276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 23151596 - 23151642
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||||| ||||||||||||||||||  |||||||||| ||||||    
T  23151596 atacattaatttttgttgatcaatttttctttatattttgagacgga 23151642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 4479622 - 4479694
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagta 76  Q
    ||||| ||||||| || || ||| ||||| |||||||||||||||||| |||  |||||| ||||||| ||||    
T  4479622 tggtataaattttgaatcaaatatattaatttttgttgatcaatttttacttgcattttgagacggagaagta 4479694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 30848636 - 30848592
Alignment:
Q  22 agatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    |||||||| ||||| |||||||| ||||||||||| |||||||||    
T  30848636 agatacatcaacttatgttgatccatttttgcttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 54010020 - 54009984
Alignment:
Q  32 acttttgttgatcaatttttgcttatattttgggacg 68  Q
    |||| |||||| |||||||||||||||||||||||||    
T  54010020 acttatgttgaccaatttttgcttatattttgggacg 54009984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31469138 - 31469062
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagtat 77  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31469138 atttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 31469062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 10459327 - 10459263
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10459327 tacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggag 10459263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 944838 - 944776
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    |||||||||||||||| ||| | |||||||||||||| |||||| ||||||||||||||||||    
T  944838 atttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatattttg 944776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17437169 - 17437239
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||| ||| | ||||||||| |||||||||  |||||||| ||||||||||||||||||    
T  17437169 atttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacggag 17437239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 41912123 - 41912182
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaa-tttttgcttatatttt 62  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  41912123 tggtacaaattttgaaccagatacattaatttttgttgaacaattttttgcttatatttt 41912182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 31469137 - 31469183
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  31469137 atacattaactttcgttgaccaatttttgcttatattttgggacgga 31469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43398881 - 43398947
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    |||||||||||||||| ||||| ||||||||||||||||| |  |||||||| ||| ||||||||||    
T  43398881 atttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttgggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 16180487 - 16180543
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||||    
T  16180487 aaattttgaaccaaatacattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44726825 - 44726892
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||| || ||||||| ||| | ||||||||| |||||||||||||||||| |||||||||| |||||    
T  44726825 atttgatataaattttaaactaaatacattaatttttgttgatcaattttttcttatatttttggacg 44726892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 15660702 - 15660760
Alignment:
Q  9 caaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    |||||||| || || ||||||||| || |||||||||||||||||||||||||| ||||    
T  15660702 caaattttgaatcaaatacattaatttgtgttgatcaatttttgcttatattttaggac 15660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 29291119 - 29291177
Alignment:
Q  13 tttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| ||||| ||| |||||||||| |||| ||||||||||||| ||||||||||||||    
T  29291119 ttttgaaccaaatatattaacttttattgaccaatttttgcttacattttgggacggag 29291177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 33829450 - 33829389
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||||||||  |||| ||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  33829450 tacaaattttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacg 33829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38935406 - 38935475
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||| |||| ||||| ||| | |||||||||||||||||||  |||||||| ||||||||| |||||||    
T  38935406 atttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgtttatatttttggacgga 38935475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 7932801 - 7932749
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||||| ||||| |||| ||||||||||||||  ||||||||||||||||||    
T  7932801 aaattttgaaccaaatacgttaacttttgttgactaatttttgcttatatttt 7932749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19924371 - 19924303
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgg 69  Q
    |||||||||||||||| ||||| |||||||||||||| ||||  || |||| |||| ||||||| ||||    
T  19924371 atttggtacaaattttgaaccatatacattaacttttattgactaacttttacttacattttggaacgg 19924303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16564443 - 16564376
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||||||||||||||| ||||| | ||  |||| ||||| || ||||||||||||||||||| |||||||    
T  16564443 atttggtacaaattttgaaccaaacac--taacgtttgtagaccaatttttgcttatattttaggacgga 16564376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 35311232 - 35311290
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttga-tcaatttttgcttatattttg 63  Q
    ||||||||||| ||||| ||||||||||||||||||| | ||||||| |||| ||||||    
T  35311232 gtacaaattttgaaccaaatacattaacttttgttgactaaattttttcttacattttg 35311290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41374572 - 41374642
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||| ||| ||| || || ||||||||||||| |||||  ||||||| ||||||||||| |||||||    
T  41374572 atttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatattttgagacggag 41374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 14781964 - 14781919
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacgg 69  Q
    ||||||||||||| ||| |||||||||| |||||||||| ||||||    
T  14781964 atacattaactttcgttaatcaatttttacttatattttaggacgg 14781919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 2949099 - 2949039
Alignment:
Q  11 aatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||| ||| | |||||||| |||||||| | ||||||||||||| |||||| |||||||    
T  2949099 aattttgaacaaaatacattagcttttgttaaccaatttttgcttacattttgagacggag 2949039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 27280020 - 27280048
Alignment:
Q  14 ttttaaccagatacattaacttttgttga 42  Q
    |||||||||||||||||||||||||||||    
T  27280020 ttttaaccagatacattaacttttgttga 27280048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3739857 - 3739933
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagtat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3739857 atttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttaggacggagtagtat 3739933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29855125 - 29855060
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    |||| ||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||    
T  29855125 atttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttggga 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30693402 - 30693332
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||| || || ||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  30693402 atttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttatttatattttcggacggag 30693332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 24023975 - 24024036
Alignment:
Q  9 caaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||||||| ||||| ||||||||||||||||||||||||||||  ||||||||| |||||||    
T  24023975 caaattttgaaccacatacattaacttttgttgatcaattttttgttatattttaggacgga 24024036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 29855124 - 29855169
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacgg 69  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  29855124 atacattaacttttgttgatcaatttttgcttatattttaggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3739863 - 3739811
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3739863 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggag 3739811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19758314 - 19758389
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagta 76  Q
    |||||||||||||| | ||| | ||||||||||||||||||| |||||||| ||||||||||  ||||||| ||||    
T  19758314 atttggtacaaattataaactaaatacattaacttttgttgaccaatttttacttatattttatgacggagaagta 19758389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47543666 - 47543605
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||||||||||||||| ||||| || |||||| ||||||||| ||||||||  |||||||||    
T  47543666 atttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttattatatttt 47543605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 35310304 - 35310359
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggg 65  Q
    ||||||| || || ||||||||| ||||||||| |||||||| |||||||||||||    
T  35310304 aaattttaaatcaaatacattaatttttgttgaccaatttttacttatattttggg 35310359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5056337 - 5056403
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    ||||| |||||||||| || || |||| |||| |||| |||| ||||||||| ||||||||||||||    
T  5056337 atttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattttgggac 5056403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 3694036 - 3694093
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgg 64  Q
    |||||||||| || || ||||||||| ||||||||| |||||| | ||||||||||||    
T  3694036 tacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatattttgg 3694093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39030630 - 39030555
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagta 76  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  39030630 atttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttagaacggagtagta 39030555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 33669973 - 33670039
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||||||    
T  33669973 tggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacattttgggacgga 33670039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38958128 - 38958058
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||||| ||| ||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  38958128 atttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggag 38958058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 34252775 - 34252714
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  34252775 aaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggag 34252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 42708648 - 42708580
Alignment:
Q  2 tttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||| ||||||| ||| | |||||||||||||||||||| ||||||||| |||||||| |||||||    
T  42708648 tttggtataaattttcaactaaatacattaacttttgttgattaatttttgcgtatattttaggacgga 42708580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14646405 - 14646475
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| ||||||||||| || || ||||||||| |||| || ||||||||| ||||||||||||||||||||    
T  14646405 atttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatattttgggacggag 14646475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42324923 - 42324985
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    |||||||| ||||||| || || ||||||||||||||||||| |||||||| |||||||||||    
T  42324923 atttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26746239 - 26746299
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| |||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||    
T  26746239 atttgatacaaatttttaactaaataaattaacttt-gttgatcaatttttgcttatatttt 26746299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26835273 - 26835334
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| || |||||| |||||||||    
T  26835273 atttgatacaaatttttaaccaaatatattaacttttgttgaccactttttgtttatatttt 26835334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39030624 - 39030676
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  39030624 accaaatacattaacttttgttgactaatttttgcttatattttgggatggag 39030676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 2424484 - 2424551
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||||||||||| ||||| |||||||||||||| | || ||||||||| ||||| ||||||| ||||    
T  2424484 tggtacaaattttgaaccaaatacattaacttttatcgaccaatttttgtttataatttgggatggag 2424551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 9956550 - 9956611
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||||| || || ||||||||||||||||| | |||||||| |||| ||||||||||||||    
T  9956550 aaattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggacggag 9956611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 25467158 - 25467214
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    ||||||| ||||| |||||||||||||| | ||||||||||| |||| |||||||||    
T  25467158 aaattttgaaccacatacattaacttttatcgatcaatttttccttagattttggga 25467214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20185356 - 20185438
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttata-ttttgggacggagtagtataatata 83  Q
    |||| ||||||||||| ||||| ||||||||| ||||||| | ||||||| ||||| | ||||| ||||||| |||||||||||    
T  20185356 attttgtacaaattttgaaccaaatacattaa-ttttgttaaccaattttagcttacatttttgtgacggaggagtataatata 20185438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33498428 - 33498353
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagta 76  Q
    |||| ||||||||||| ||||| ||| ||| | ||||||||  ||| ||||||||||||||| |||||||| ||||    
T  33498428 attttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttatattttaggacggaggagta 33498353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 5727779 - 5727714
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||||||||| ||||| ||| ||||| |||| |||| |||||||| |||| |||||||||||||    
T  5727779 tggtacaaattttaaacca-atatattaatttttattgaccaatttttacttacattttgggacgga 5727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 11507922 - 11507888
Alignment:
Q  16 ttaaccagatacattaacttttgttgatcaatttt 50  Q
    ||||||||||||||||||||||||||| |||||||    
T  11507922 ttaaccagatacattaacttttgttgaccaatttt 11507888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 11515293 - 11515259
Alignment:
Q  16 ttaaccagatacattaacttttgttgatcaatttt 50  Q
    ||||||||||||||||||||||||||| |||||||    
T  11515293 ttaaccagatacattaacttttgttgaccaatttt 11515259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 11522695 - 11522661
Alignment:
Q  16 ttaaccagatacattaacttttgttgatcaatttt 50  Q
    ||||||||||||||||||||||||||| |||||||    
T  11522695 ttaaccagatacattaacttttgttgaccaatttt 11522661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 11530107 - 11530073
Alignment:
Q  16 ttaaccagatacattaacttttgttgatcaatttt 50  Q
    ||||||||||||||||||||||||||| |||||||    
T  11530107 ttaaccagatacattaacttttgttgaccaatttt 11530073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26730097 - 26730147
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaattttt 51  Q
    ||||| ||||||||||||| || ||||||||||||||||| | ||||||||    
T  26730097 atttgatacaaatttttaatcaaatacattaacttttgttaaccaattttt 26730147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19644441 - 19644502
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||| ||| ||||||| ||||| |||| |||| ||||||||||||||| || ||||||||||    
T  19644441 atttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttatatttt 19644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30293443 - 30293382
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| || ||||||| || || ||||||| ||||||||||||||| |||| ||||||||||    
T  30293443 atttgatataaattttgaatcaaatacattgacttttgttgatcaaattttacttatatttt 30293382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 4576941 - 4576877
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||| ||||| ||||  |||||||||||| ||| ||  ||| ||||||||||||||||||||||    
T  4576941 gtacagattttgaaccgcatacattaacttctgtcgacaaatatttgcttatattttgggacgga 4576877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 12002809 - 12002769
Alignment:
Q  11 aatttttaaccagatacattaacttttgttgatcaattttt 51  Q
    |||||| ||||| |||||||||||||| |||||||||||||    
T  12002809 aattttaaaccatatacattaacttttattgatcaattttt 12002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 12619685 - 12619729
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    |||||| ||||| |||||||| |||||||||||||||||| ||||    
T  12619685 atacatcaacttatgttgatccatttttgcttatattttgagacg 12619729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 16500615 - 16500555
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||| |||||  |||||||| ||||||||| ||||||||||||| ||||  |||||||    
T  16500615 aaattttgaaccaattacattaatttttgttgaacaatttttgcttacatttgtggacgga 16500555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6803374 - 6803303
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggagt 72  Q
    |||||||||||||||| ||| | ||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  6803374 atttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttgggacagagt 6803303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 16866448 - 16866501
Alignment:
Q  5 ggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttata 58  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  16866448 ggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 16866445 - 16866398
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  16866445 atacattaacttttattgatcaatttttgcttatattttgggatggag 16866398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3719920 - 3719982
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    ||||||| ||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||    
T  3719920 atttggttcaaattttttacgagatacatcaacttatgttgatcaatttttgcttacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5026207 - 5026141
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    ||||||||||||||||  || | ||| ||||||||||||| | ||||||||||||||||||||||||    
T  5026207 atttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44816534 - 44816472
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    |||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||| ||||||    
T  44816534 atttggtacaaattttgaaccaaatacattaacttttgttggccaatttttgtttacattttg 44816472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18732057 - 18731990
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||||| |||| |||  ||||||||||| || || |||||||| |||||||||||||||||||||||    
T  18732057 atttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 18732036 - 18732101
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||| ||||||| ||||| |||||||||||||| |||| |||||||| |||| ||||| |||||||    
T  18732036 tggtataaattttgaaccaaatacattaacttttattgaccaattttt-cttacattttaggacgga 18732101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 1554883 - 1554948
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||||||||| ||| | |||| | ||||||| |||| ||||||||| ||||||||| ||||||||    
T  1554883 gtacaaattttaaacaaaatacgtgaacttttattgaccaatttttgtttatattttaggacggag 1554948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 4259371 - 4259408
Alignment:
Q  24 atacattaacttttgtt-gatcaatttttgcttatatt 60  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  4259371 atacattaacttttgttagatcaatttttgcttatatt 4259408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30794508 - 30794447
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||||||||||||||| || || ||| ||||| ||||||||| ||| |||| ||||||||||    
T  30794508 atttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttatatttt 30794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47967980 - 47967911
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||| ||||||||||| ||| | |||||| || ||||||||| | | ||||| |||||||||||||||||    
T  47967980 atttagtacaaattttaaactaaatacataaatttttgttgaccgaattttgtttatattttgggacgga 47967911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 3769802 - 3769858
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    |||||||||| ||| | ||||||||||||||||  ||||||||||  ||||||||||    
T  3769802 tacaaattttaaactaaatacattaacttttgtatatcaatttttatttatattttg 3769858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 13236 - 13178
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgg 64  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  13236 gtacaaattttaaaccaaatacattaacttttgttgatccatttttgcttacattttgg 13178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 31280219 - 31280161
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||    
T  31280219 tggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32221513 - 32221575
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttg 63  Q
    |||||||||||||||| ||||| |||||||||||||||||||  |||||||||||| ||||||    
T  32221513 atttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26914492 - 26914555
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgg 64  Q
    |||| ||| ||||||| ||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  26914492 atttagtataaattttgaaccacatacattaatttttgttgatcaatttttgcttacattttgg 26914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 46829098 - 46829040
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacggagtagtat 77  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  46829098 accaaatacattgacttttgttgaccaatttttgcttatattttaggacggaatagtat 46829040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 46829108 - 46829152
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  46829108 atacattaacttttgttgaccaatttttgcttatattttaggacg 46829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 40905866 - 40905808
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| ||||||| ||||| ||| ||||||||||||||| ||||||||||||| |||||    
T  40905866 tggtataaattttgaaccaaataaattaacttttgttgaccaatttttgcttacatttt 40905808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 47783139 - 47783082
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgg 64  Q
    |||||||||| ||||| |||||||||||||| |||| |||||||| |||| |||||||    
T  47783139 tacaaattttgaaccaaatacattaactttttttgaccaatttttacttacattttgg 47783082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32221537 - 32221468
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||| |||| |||  |||| |||||| || || || ||||||||||||||||| |||||||||||||    
T  32221537 atttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacgga 32221468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 15282686 - 15282638
Alignment:
Q  21 cagatacattaacttttgttgatcaatttttgcttatattttgggacgg 69  Q
    ||||| ||| ||||| |||||||| ||||||| ||||||||||||||||    
T  15282686 cagattcatcaacttatgttgatccatttttgtttatattttgggacgg 15282638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 21383778 - 21383810
Alignment:
Q  34 ttttgttgatcaatttttgcttatattttggga 66  Q
    |||||||||||||||| ||||||||||||||||    
T  21383778 ttttgttgatcaatttctgcttatattttggga 21383810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 31323878 - 31323817
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggg 65  Q
    ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| ||||||||    
T  31323878 tggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattttggg 31323817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28004666 - 28004731
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    |||||||||||||||| | ||| |||||||||||||||||||  ||||||  ||||||||||||||    
T  28004666 atttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 7343311 - 7343354
Alignment:
Q  28 attaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  7343311 attaacttttgttgatcaatttttacttatattttaggacggag 7343354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9829958 - 9829891
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    |||||||||||||||| ||| | ||||||||| |||||||||  ||||||| ||||||||| ||||||    
T  9829958 atttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttagggacg 9829891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8437817 - 8437886
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||||||||||||||| || || ||||||||| |||||||||  || |||| ||||||||||| ||||||    
T  8437817 atttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacgga 8437886  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 14446754 - 14446697
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    ||||||| ||| | ||||||||||||||||||| ||| ||||||||| ||||||||||    
T  14446754 aaattttgaacaacatacattaacttttgttgaccaacttttgcttacattttgggac 14446697  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 31522654 - 31522717
Alignment:
Q  4 tggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    ||||||||||||| || || || |||||||||||||||| ||| ||||||||| |||||||||||    
T  31522654 tggtacaaattttgaatcaaatgcattaacttttgttgaccaa-ttttgcttacattttgggacg 31522717  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28756708 - 28756663
Alignment:
Q  17 taaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||||| ||||||||||||| ||||| ||| |||||||||||||||    
T  28756708 taaccaaatacattaactttcgttgaccaaattttgcttatatttt 28756663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33822355 - 33822286
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||| |||||||||| ||| | ||| ||||||||||||| ||||||||||  ||| ||||| |||||||    
T  33822355 atttgatacaaattttgaactaaatatattaacttttgttaatcaatttttatttacattttaggacgga 33822286  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35003826 - 35003757
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    |||| ||||||||||| || || ||||||||| |||| || | |||||||| |||||||||| |||||||    
T  35003826 attttgtacaaattttgaatcaaatacattaatttttattaaccaatttttacttatattttaggacgga 35003757  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8215272 - 8215204
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgg 69  Q
    ||||| |||||||||   |||| |||||||||| |||||||||||||||||  | |||||||| |||||    
T  8215272 atttgatacaaatttcagaccaaatacattaacatttgttgatcaatttttattaatattttgagacgg 8215204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9675811 - 9675759
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    ||||||| ||| ||||| |||||| ||||||||||||| |||||| |||||||    
T  9675811 accagatgcatcaacttatgttgaccaatttttgcttacattttgagacggag 9675759  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30531245 - 30531181
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggg 65  Q
    |||||||||||| ||| ||||| |||||| ||||| |||||| |  |||||||||| ||||||||    
T  30531245 atttggtacaaactttgaaccaaatacatcaacttatgttgacccgtttttgcttacattttggg 30531181  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 31323875 - 31323923
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    ||||||||||| ||||| |||||| | ||||||||||| ||||||||||    
T  31323875 accagatacatcaacttatgttgacctatttttgcttacattttgggac 31323923  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 13210025 - 13209977
Alignment:
Q  7 tacaaatttttaaccagatacattaacttttgttgatcaatttttgctt 55  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  13210025 tacaaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29111002 - 29111069
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacg 68  Q
    |||||||| ||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||| ||||    
T  29111002 atttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttgagacg 29111069  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 8777827 - 8777775
Alignment:
Q  10 aaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||    
T  8777827 aaattttgaaccaaatatattaacttttgttgatcaatttttgtttatatttt 8777775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 11114297 - 11114349
Alignment:
Q  19 accagatacattaacttttgttgatcaatttttgcttatattttgggacggag 71  Q
    |||| |||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  11114297 accaaatacatcaacttatgttgatcaatttttacttatattttgggacggag 11114349  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 35901083 - 35901147
Alignment:
Q  6 gtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggacgga 70  Q
    ||||||||||| | ||  ||||||||||||||||||| | ||||||||||||||||| |||||||    
T  35901083 gtacaaattttgagcccaatacattaacttttgttgacctatttttgcttatattttaggacgga 35901147  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33557818 - 33557884
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgggac 67  Q
    ||||| |||||||||| ||| | |||||||||||||| ||||||||||||| ||||| |||| ||||    
T  33557818 atttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttatgttttaggac 33557884  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7974829 - 7974894
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    |||||||||||||||| |   | |||||||||||||| |||| ||||||||| |||||||||||||    
T  7974829 atttggtacaaattttgacaaaaatacattaacttttattgaccaatttttgtttatattttggga 7974894  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 44080741 - 44080779
Alignment:
Q  24 atacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  44080741 atacattaatttttgttgatcaatttttacttatatttt 44080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9548092 - 9548153
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||| ||||||||||| ||||| ||| | ||| ||||||||| ||||||||| |||||||||    
T  9548092 atttagtacaaattttgaaccaaatataataatttttgttgaacaatttttgtttatatttt 9548153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28234 - 28171
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttgg 64  Q
    ||||||||| |||||| ||||| ||||||||||||||||| ||||||||||  |||||||||||    
T  28234 atttggtacgaattttgaaccaaatacattaacttttgttaatcaatttttatttatattttgg 28171  T

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Target: scaffold2113 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 619 - 684
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatattttggga 66  Q
    |||||||||||||||| ||| | ||||| |||||||||||||  ||||||  ||||||||||||||    
T  619 atttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttatattttggga 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18291 - 18351
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| |||||||||||||| | ||| ||||| ||||||||||||||||||| |||||||||    
T  18291 atttgatacaaatttttaactaaatatattaa-ttttgttgatcaatttttgtttatatttt 18351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37978 - 37928
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaattttt 51  Q
    |||||||| ||||||| ||||| |||||||||||||||||||  |||||||    
T  37978 atttggtataaattttaaaccaaatacattaacttttgttgactaattttt 37928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36007 - 35946
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    ||||| ||||||||||  |||| ||||||||||  ||||||||||||||||  |||||||||    
T  36007 atttgatacaaattttgtaccaaatacattaacggttgttgatcaatttttatttatatttt 35946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 95013 - 94952
Alignment:
Q  1 atttggtacaaatttttaaccagatacattaacttttgttgatcaatttttgcttatatttt 62  Q
    |||||||||||||||| |||   ||||||||| |||| |||||||||||| ||||| |||||    
T  95013 atttggtacaaattttgaacataatacattaatttttattgatcaattttcgcttacatttt 94952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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