View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_61 (Length: 286)
Name: NF0593_low_61
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 3572640 - 3572404
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572640 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
3572541 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattct |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572540 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattct |
3572441 |
T |
|
| Q |
203 |
tcccatgacaaggtctggagtagagggggaaagcttg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3572440 |
tcccatgacaaggtctggagtagagggggaaagcttg |
3572404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 3575924 - 3575688
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
||||||||||| || | || ||||| || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
3575924 |
agttcacggttcttggcaaatgtctctgggtcagcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataagatggagctt |
3575825 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattct |
202 |
Q |
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|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| ||||| |
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| T |
3575824 |
caccagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattct |
3575725 |
T |
|
| Q |
203 |
tcccatgacaaggtctggagtagagggggaaagcttg |
239 |
Q |
| |
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|||||| |||||||||||||| || |||||||||||| |
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| T |
3575724 |
tcccatcacaaggtctggagtggaaggggaaagcttg |
3575688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 3585294 - 3585530
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
|||||||||||||| | || ||||| || || |||||||| |||||||| ||||| ||||| ||||| |||||||| || || |||||||||||||||| |
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| T |
3585294 |
agttcacggtttttggcaaatgtctctgggtcggcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgaggtaagatggagctt |
3585393 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
3585394 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattct |
3585493 |
T |
|
| Q |
203 |
tcccatgacaaggtctggagtagagggggaaagcttg |
239 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||| |
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| T |
3585494 |
tcccatcacaaggtctggagtcgaaggggaaagcttg |
3585530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 3563945 - 3563741
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
|||||||||||||| | || ||||| || |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||| |||| |
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| T |
3563945 |
agttcacggtttttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggatggggctt |
3563846 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattct |
202 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| || | ||| |
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| T |
3563845 |
caccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactct |
3563746 |
T |
|
| Q |
203 |
tccca |
207 |
Q |
| |
|
||||| |
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|
| T |
3563745 |
tccca |
3563741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 3569593 - 3569389
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
||||||||||| || | || ||||| || |||||||||||||||||||||||||| || |||||||| || |||||||| || ||||| ||||| |||| |
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| T |
3569593 |
agttcacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtaggatggggctt |
3569494 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattct |
202 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| || | ||| |
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|
| T |
3569493 |
caccggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactct |
3569394 |
T |
|
| Q |
203 |
tccca |
207 |
Q |
| |
|
||||| |
|
|
| T |
3569393 |
tccca |
3569389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 13275873 - 13275728
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||||||||||||||||||| | ||| ||||| ||||| || ||||||||||| | ||||||||| || | |
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|
| T |
13275873 |
agttcacggttttttgcaaatgtctctggatcagcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatggggcct |
13275774 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtacca |
148 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
13275773 |
caccaaagaatgggcccaggtacttgacacggtctggaccatacca |
13275728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 38356960 - 38356807
Alignment:
| Q |
3 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
102 |
Q |
| |
|
||||||||||| || | ||| ||||| || ||||||||||||||||||||||||||||| |||||||| || || || ||||| | |||||| || | | |
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|
| T |
38356960 |
agttcacggttcttggcgaatgtctctgggtcagcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaagacgggggct |
38356861 |
T |
|
| Q |
103 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttc |
156 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
38356860 |
caccagagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttc |
38356807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 42602716 - 42602621
Alignment:
| Q |
44 |
tccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctgg |
139 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||| |
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|
| T |
42602716 |
tccagctgtgtcccatccataatcaccaggaaattcaccagtcaagtatgatggaatttgttcagagaatggacccaagtacttgggacggtctgg |
42602621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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