View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_64 (Length: 281)

Name: NF0593_low_64
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_64
NF0593_low_64
[»] chr8 (8 HSPs)
chr8 (50-185)||(5887214-5887349)
chr8 (47-185)||(5984606-5984744)
chr8 (47-185)||(5949078-5949216)
chr8 (47-184)||(5921187-5921324)
chr8 (47-184)||(5960344-5960481)
chr8 (57-185)||(5843075-5843203)
chr8 (57-185)||(5849817-5849945)
chr8 (84-157)||(39916637-39916710)
[»] chr2 (2 HSPs)
chr2 (78-165)||(42788976-42789063)
chr2 (78-114)||(27172818-27172854)
[»] chr7 (2 HSPs)
chr7 (74-139)||(45676080-45676145)
chr7 (84-130)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (84-134)||(44674039-44674089)
chr3 (79-139)||(34626700-34626760)
[»] chr5 (1 HSPs)
chr5 (84-134)||(1281333-1281383)
[»] chr1 (2 HSPs)
chr1 (84-134)||(16127411-16127461)
chr1 (74-140)||(37962858-37962924)
[»] chr4 (1 HSPs)
chr4 (84-136)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 5887349 - 5887214
Alignment:
Q  50 tcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagt 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887349 tcatttatatatcatgatgtgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagt 5887250  T
Q  150 ttctctcatcaagaagtagcactcattgtagaacta 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  5887249 ttctctcatcaagaagtagcactcattgtagaacta 5887214  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 5984744 - 5984606
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984744 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5984645  T
Q  147 agtttctctcatcaagaagtagcactcattgtagaacta 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5984644 agtttctctcatcaagaagtagcactcattgtagaacta 5984606  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 5949216 - 5949078
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5949216 ttttcatttgtatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtgga 5949117  T
Q  147 agtttctctcatcaagaagtagcactcattgtagaacta 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5949116 agtttctctcatcaagaagtagcactcattgtagaacta 5949078  T

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Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 5921324 - 5921187
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921324 ttttcatttgtatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 5921225  T
Q  147 agtttctctcatcaagaagtagcactcattgtagaact 184  Q
    |||||||||||||||||||  ||||||||| |||||||    
T  5921224 agtttctctcatcaagaagctgcactcattctagaact 5921187  T

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Target: chr8; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 5960481 - 5960344
Alignment:
Q  47 ttttcatttatatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtgga 146  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5960481 ttttcatttgtatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtgga 5960382  T
Q  147 agtttctctcatcaagaagtagcactcattgtagaact 184  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5960381 agtttctctcaacaagaagtagcactcattgtagaact 5960344  T

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Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 5843203 - 5843075
Alignment:
Q  57 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 156  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  5843203 tatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctctt 5843104  T
Q  157 atcaagaagtagcactcattgtagaacta 185  Q
    || ||||||||||| ||||| ||||||||    
T  5843103 atgaagaagtagcaatcattatagaacta 5843075  T

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Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 5849945 - 5849817
Alignment:
Q  57 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctc 156  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849945 tatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctt 5849846  T
Q  157 atcaagaagtagcactcattgtagaacta 185  Q
    || ||||||||||| ||||| ||||||||    
T  5849845 atgaagaagtagcaatcattatagaacta 5849817  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 39916637 - 39916710
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 157  Q
    ||||||||||| || |||||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 42789063 - 42788976
Alignment:
Q  78 ctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaag 165  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaag 42788976  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 27172854 - 27172818
Alignment:
Q  78 ctgcagagatgtggaaagagttgcagattaagatgga 114  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27172854 ctgcaaagatgtggaaagagttgcagattaagatgga 27172818  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  74 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 139  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 48892676 - 48892630
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacc 130  Q
    ||||||||||| ||||||||| |||||||||| || |||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagacc 48892630  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 134  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  79 tgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 139  Q
    |||| ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 134  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 134  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 37962858 - 37962924
Alignment:
Q  74 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaa 140  Q
    |||| |||| || ||||| ||||||||||| |||||||||||||||||  | || ||||||||||||    
T  37962858 aggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 43560603 - 43560551
Alignment:
Q  84 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 136  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  43560603 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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