View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_66 (Length: 278)
Name: NF0593_low_66
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 54688692 - 54688813
Alignment:
| Q |
42 |
ggaagatcttaataaggtgtctaaatgttcattcgatttaagaatgagtgggtgtggtcttgatggcaagctgattgagcgaccgtggaaattggatttt |
141 |
Q |
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| T |
54688692 |
ggaagatcttaataaggtgtctaaatgttcattacatttaagaatgagtgggtgtggtcttgatggcaagctgattgagcgaccgtggaaattggatttt |
54688791 |
T |
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| Q |
142 |
gagttcaaaggagaggctgcca |
163 |
Q |
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| T |
54688792 |
gagttcaaaggagaggctgcca |
54688813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 54700638 - 54700752
Alignment:
| Q |
49 |
cttaataaggtgtctaaatgttcattcgatttaagaatgagtgggtgtggtcttgatggcaagctgattgagcgaccgtggaaattggattttgagttca |
148 |
Q |
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| T |
54700638 |
cttaacaaggtgtccaaatgttcattgcatttaagcatgagtgggtgtggtctagatggcaagctgtttgagcgaccatggaaattggattttgagttca |
54700737 |
T |
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| Q |
149 |
aaggagaggctgcca |
163 |
Q |
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| T |
54700738 |
aaggagaggctgcca |
54700752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 54693269 - 54693382
Alignment:
| Q |
42 |
ggaagatcttaataaggtgtctaaatgttcattcgatttaagaatgagtgggtgtggtcttgatggcaagctgattgagcgaccgtggaaattggatttt |
141 |
Q |
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|||||| |||| ||||||||| ||||||| ||| ||| ||||||||||||||||||||| || ||||| ||| |||||||||| |||||||| |||||| |
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| T |
54693269 |
ggaagaccttagtaaggtgtccaaatgttgattgcattgaagaatgagtgggtgtggtctagagggcaaactgtttgagcgaccatggaaatttgatttt |
54693368 |
T |
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| Q |
142 |
gagttcaaaggaga |
155 |
Q |
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| T |
54693369 |
gtattcaaaggaga |
54693382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 54688825 - 54688865
Alignment:
| Q |
184 |
ggttaaggagaaagagaagccttaatgttgaatgttgattt |
224 |
Q |
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| T |
54688825 |
ggttaaggagaaagagaagccttaatgttgaatgttgattt |
54688865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 54700772 - 54700812
Alignment:
| Q |
184 |
ggttaaggagaaagagaagccttaatgttgaatgttgattt |
224 |
Q |
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| T |
54700772 |
ggttaaggagaaagagaagccttaatgttgaatgttgattt |
54700812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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