View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_70 (Length: 270)
Name: NF0593_low_70
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 3572608 - 3572404
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572608 |
agcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
3572509 |
T |
|
| Q |
119 |
tctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaa |
218 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572508 |
tctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaa |
3572409 |
T |
|
| Q |
219 |
gcttg |
223 |
Q |
| |
|
||||| |
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|
| T |
3572408 |
gcttg |
3572404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 3575892 - 3575688
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
| |
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|||||| || |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3575892 |
agcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataagatggagcttcaccagagaatggacccaagtatttgacacga |
3575793 |
T |
|
| Q |
119 |
tctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaa |
218 |
Q |
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|||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |
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| T |
3575792 |
tctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttcccatcacaaggtctggagtggaaggggaaa |
3575693 |
T |
|
| Q |
219 |
gcttg |
223 |
Q |
| |
|
||||| |
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|
| T |
3575692 |
gcttg |
3575688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 3585327 - 3585530
Alignment:
| Q |
20 |
gcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggt |
119 |
Q |
| |
|
||||| || |||||||| ||||| ||||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585327 |
gcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggt |
3585426 |
T |
|
| Q |
120 |
ctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaag |
219 |
Q |
| |
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|||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |
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| T |
3585427 |
ctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttcccatcacaaggtctggagtcgaaggggaaag |
3585526 |
T |
|
| Q |
220 |
cttg |
223 |
Q |
| |
|
|||| |
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|
| T |
3585527 |
cttg |
3585530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 3563913 - 3563741
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
3563913 |
agcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggatggggcttcaccggagaatgggcccaagtacttgacacgg |
3563814 |
T |
|
| Q |
119 |
tctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
191 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| || | |||||||| |
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| T |
3563813 |
tctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccca |
3563741 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 3569561 - 3569389
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| || |||||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||| |
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| T |
3569561 |
agcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtaggatggggcttcaccggagaatgggcccaagtacttcacacgg |
3569462 |
T |
|
| Q |
119 |
tctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
191 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| || | |||||||| |
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| T |
3569461 |
tctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccca |
3569389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 13275841 - 13275728
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||| ||||| || ||||||||||| | ||||||||| || |||||| ||||||| |||| ||||||||||||| |
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|
| T |
13275841 |
agcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatggggcctcaccaaagaatgggcccaggtacttgacacgg |
13275742 |
T |
|
| Q |
119 |
tctggaccgtacca |
132 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
13275741 |
tctggaccatacca |
13275728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 38356928 - 38356807
Alignment:
| Q |
19 |
agcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacgg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || || || ||||| | |||||| || | |||||||||||||| || |||||||| |||||| |
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|
| T |
38356928 |
agcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaagacgggggctcaccagagaatgggcctaagtacttaacacgg |
38356829 |
T |
|
| Q |
119 |
tctggaccgtaccacgggcttc |
140 |
Q |
| |
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||||| |||||||| ||||||| |
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|
| T |
38356828 |
tctgggccgtaccatgggcttc |
38356807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 42602716 - 42602621
Alignment:
| Q |
28 |
tccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctgg |
123 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||| |
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|
| T |
42602716 |
tccagctgtgtcccatccataatcaccaggaaattcaccagtcaagtatgatggaatttgttcagagaatggacccaagtacttgggacggtctgg |
42602621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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