View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_79 (Length: 254)
Name: NF0593_low_79
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 19025521 - 19025731
Alignment:
| Q |
11 |
tagcatagggctcatgatttgtctttggtgttgcttttggggttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtaca |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19025521 |
tagcaaagggctcatgatttgtctttggtgttgcttttggggttccaaagacattccaaaatctcagagtctcatccgcagctgcagttgccacggtaca |
19025620 |
T |
|
| Q |
111 |
cccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttc |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19025621 |
cccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaatttggttc |
19025720 |
T |
|
| Q |
211 |
ttagtcaaacc |
221 |
Q |
| |
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||||||||||| |
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|
| T |
19025721 |
ttagtcaaacc |
19025731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 20729115 - 20728905
Alignment:
| Q |
11 |
tagcatagggctcatgatttgtctttggtgttgcttttggggttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtaca |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20729115 |
tagcaaagggctcatgatttgtctttggtgttgcttttggggttccaaagacattccaaaatctcagagtctcatccgcagctgcagttgccacggtaca |
20729016 |
T |
|
| Q |
111 |
cccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20729015 |
cccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaatttggttc |
20728916 |
T |
|
| Q |
211 |
ttagtcaaacc |
221 |
Q |
| |
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||||||||||| |
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| T |
20728915 |
ttagtcaaacc |
20728905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 43526327 - 43526483
Alignment:
| Q |
55 |
ccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgtgac |
154 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||| ||||| |||| |||||| |||||||||||||||||||| | ||| |||| |||||| || ||||||| |
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| T |
43526327 |
ccaaagacattccaaaatctaagagtttcatctgcagccgcagatgccactgtacacccatctggactctgcgccatatacagcaccctcgaagtgtgac |
43526426 |
T |
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| Q |
155 |
cgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttct |
211 |
Q |
| |
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| || || || ||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
43526427 |
cattgagatctgccattttcaccatagaaggatacttccaaagggtaagctggttct |
43526483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 18686091 - 18685961
Alignment:
| Q |
91 |
gctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatact |
190 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||||||||||| || |||||| ||||||||||| | |||||| || ||||||| ||| |||||||||| |
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| T |
18686091 |
gctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatact |
18685992 |
T |
|
| Q |
191 |
tccaaagggtaagctggttcttagtcaaacc |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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| T |
18685991 |
tccaaagggtaagctggttctgagtcaaacc |
18685961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 13118868 - 13119022
Alignment:
| Q |
57 |
aaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgtgaccg |
156 |
Q |
| |
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|||||||||||||| |||||||||||| || || | ||||| |||||| |||||||||||||||||||| | |||| ||| |||||| || |||||||| |
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| T |
13118868 |
aaagacattccaaaatctcagagtctcgtcagcggatgcagatgccactgtacacccatctggactctgcgccatgcacagcaccctcgaagtgtgacct |
13118967 |
T |
|
| Q |
157 |
ttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttct |
211 |
Q |
| |
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| ||||| |||||| ||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
13118968 |
ctgagctccgccatcctcaccatcgaaggatagctccaaagggtaagctggttct |
13119022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 16695082 - 16694923
Alignment:
| Q |
52 |
gttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgt |
151 |
Q |
| |
|
||||||||||||||||| | ||| || || ||||| || || ||||||||||| || |||||||||||||||||||||| || |||||| ||||| | |
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| T |
16695082 |
gttccaaagacattccataatcttagtgtttcatctgcggcagcagttgccaccatatctccatctggactctgtgtcatgtgcagcaccctcgaggtat |
16694983 |
T |
|
| Q |
152 |
gaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttct |
211 |
Q |
| |
|
|||| || ||||| |||||||||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
16694982 |
gacccttgagctctgccatcttcaccattgaagaatacttccataggataagctggttct |
16694923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 17669318 - 17669159
Alignment:
| Q |
52 |
gttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgt |
151 |
Q |
| |
|
||||||||||||||||| | ||| || || ||||| || || ||||||||||| || |||||||||||||||||||||| || |||||| ||||| | |
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| T |
17669318 |
gttccaaagacattccataatcttagtgtttcatctgcggcagcagttgccaccatatctccatctggactctgtgtcatgtgcagcaccctcgaggtat |
17669219 |
T |
|
| Q |
152 |
gaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttct |
211 |
Q |
| |
|
|||| || ||||| |||||||||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
17669218 |
gacccttgagctctgccatcttcaccattgaagaatacttccataggataagctggttct |
17669159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 43169555 - 43169755
Alignment:
| Q |
11 |
tagcatagggctcatgatttgtctttggtgttgcttttggggttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtaca |
110 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| ||| ||||||||| |||||||||| ||| |||| | || |||||||| |||||| |||| |
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|
| T |
43169555 |
tagcaaagggctcattgtttgtctttggtgctgctgcagggtttccaaagatattccaaattttcacagtcccgtcgttagctgcagatgccactttaca |
43169654 |
T |
|
| Q |
111 |
cccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttc |
210 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| |
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| T |
43169655 |
cccatctggactctgtgccatgtgcagcacctttgaggtgtgaccgttaaggtcagccatcttcaacatggaaggatacttccaaagagtaagttggttc |
43169754 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
|
| |
|
|
| T |
43169755 |
t |
43169755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 43218735 - 43218574
Alignment:
| Q |
48 |
tggggttccaaagacattccaaattctcagagtctcatccgcagctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgag |
147 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| |||| | || |||||||| |||||| |||||||||||||||||||| ||||| || |||| ||||| |
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| T |
43218735 |
tgggtttccaaagatattccaaattttcacagtcccgtcgttagctgcagatgccactttacacccatctggactctgt--catgtgcagcacctttgag |
43218638 |
T |
|
| Q |
148 |
gtgtgaccgttaagctcagccatcttcaccatggaaggatacttccaaagggtaagctggttct |
211 |
Q |
| |
|
|||||||| ||||| || ||| |||||| ||| ||||||||||||||||| || || ||||||| |
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|
| T |
43218637 |
gtgtgaccattaaggtcggccttcttcaacattgaaggatacttccaaagagtgagttggttct |
43218574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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