View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_82 (Length: 251)
Name: NF0593_low_82
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12020483 - 12020710
Alignment:
| Q |
1 |
gttgttatttgccaccatcttcaaatctgaaaaacattatagt-caatgccaggaatcacaggtccttcagattattctaaagaacctattcgtcacccc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12020483 |
gttgttatttgccaccatcttcaaatctgaaaaacattatagaacaatgccaggaatcacaggtccttcagattattctaaagaacctattcgtcacccc |
12020582 |
T |
|
| Q |
100 |
tctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataaccatatactatatacattgcta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12020583 |
tctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataacc-------atatacattgcta |
12020675 |
T |
|
| Q |
200 |
tttatatcgagtttcaaatgattttaatgtatcgg |
234 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
12020676 |
tttatatcgagtttcaaatgattttaacgtatcgg |
12020710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 8474258 - 8474181
Alignment:
| Q |
44 |
caatgccaggaatcacaggtccttcagattattctaaagaacctattcgtcacccctctcttcaaattaactccaagg |
121 |
Q |
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||||||||||| | |||| || ||||||||||| |||||||| |||||| || ||||||||||| |||||||||| |
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| T |
8474258 |
caatgccaggattaacagcaccatcagattattccaaagaaccacctcgtcatccttctcttcaaatcaactccaagg |
8474181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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