View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_83 (Length: 251)
Name: NF0593_low_83
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_83 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37844960 - 37845201
Alignment:
| Q |
1 |
tgcaactaagtgtcatgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactactggattggaggggattatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844960 |
tgcaactaagtgtcatgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactactggattggaggggattatgg |
37845059 |
T |
|
| Q |
101 |
tttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatatggagtgaccggcttaagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845060 |
tttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatatggagtgaccggcttaagatt |
37845159 |
T |
|
| Q |
201 |
gctgttggaattgctcaaggattagcgcatctgcagtattat |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37845160 |
gctgttggaattgctcaaggattagcgcatctgcattattat |
37845201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 37843107 - 37843327
Alignment:
| Q |
15 |
atgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactactggattggaggggattatggtttagtcttatata |
114 |
Q |
| |
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|||| ||||||||||||||| |||| ||||| |||||||| ||| |||| |||||||| |||||||||||||| ||| |||||||||||||| ||| |
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| T |
37843107 |
atgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatg |
37843206 |
T |
|
| Q |
115 |
aattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatatggagtgaccggcttaagattgctgttggaattgc |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
37843207 |
aattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgc |
37843306 |
T |
|
| Q |
215 |
tcaaggattagcgcatctgca |
235 |
Q |
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| T |
37843307 |
tgaaggactagcatatctgca |
37843327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 37832000 - 37832147
Alignment:
| Q |
24 |
gaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactactggattggaggggattatggtttagtcttatataaattcatgg |
123 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||| ||| ||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
37832000 |
gaaattgaagtccttgggatgtttaagcatcgaaatttgatcaaacacgcagactactggattggagaggaatatggtttagtcttatatgaattcatgg |
37832099 |
T |
|
| Q |
124 |
aaaatggaagccttcatgatattttgcatgagaagaaacccccaccac |
171 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37832100 |
aaaatggaagccttcatgatattttgcatgaaaagaaacccccaccac |
37832147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 37837546 - 37837702
Alignment:
| Q |
79 |
actggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttat |
178 |
Q |
| |
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||||||||||| || ||||||||| || ||||||||||||| ||||||||||||||| |||| ||||||||||| | |||||||||||||||||| | |
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| T |
37837546 |
actggattggaaatgactatggtttaatcatatataaattcattgaaaatggaagcctttatgaaattttgcatgaaatgaaacccccaccacccttaag |
37837645 |
T |
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| Q |
179 |
atggagtgaccggcttaagattgctgttggaattgctcaaggattagcgcatctgca |
235 |
Q |
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| T |
37837646 |
gtggagtgttcggtttaatatagctgttggaattgctcaaggactagcttatctgca |
37837702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 37850883 - 37850979
Alignment:
| Q |
76 |
actactggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccacc |
172 |
Q |
| |
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|||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
37850883 |
actactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttcatgatatcttgcatgaaaagaaacctccaccacc |
37850979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 8680207 - 8680131
Alignment:
| Q |
96 |
tatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccacc |
172 |
Q |
| |
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| T |
8680207 |
tatggtttactcttatatgaattcatggaaaatggaagccttcatgatattttgcatgaaaagaaacccccgccacc |
8680131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 40542126 - 40542255
Alignment:
| Q |
94 |
attatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatatggagtgaccggct |
193 |
Q |
| |
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|||||||| || ||| ||| | ||||||| ||||||||||||| |||| |||||||||||||||| || || | | |||| | ||||| || | || |
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| T |
40542126 |
attatggtctaatctcatacagattcatgccaaatggaagcctttatgaagttttgcatgagaagaatccgccgcaatccttaaaatggaatgtcaggaa |
40542225 |
T |
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| Q |
194 |
taagattgctgttggaattgctcaaggatt |
223 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
40542226 |
taagatagctgttggaattgctcaaggatt |
40542255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 29250658 - 29250525
Alignment:
| Q |
15 |
atgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactactggattggaggggattatggtttagtcttatata |
114 |
Q |
| |
|
|||| ||| |||||||||| |||| ||||| |||||| ||| |||| ||||| ||| |||| ||||||||| ||| |||||||||||||| | | |
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| T |
29250658 |
atgtgcaaagaaattgaagcacttggaatgtgtaagcaattaaacatgatcaaataagcatactaatggattggataggaatatggtttagtcttgtttg |
29250559 |
T |
|
| Q |
115 |
aattcatggaaaatggaagccttcatgatatttt |
148 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
29250558 |
aattcatagaaaatggaagccttcatgatatttt |
29250525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 36866265 - 36866383
Alignment:
| Q |
117 |
ttcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatatggagtgaccggcttaagattgctgttggaattgctc |
216 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||||| |||||||||||||||||||| | |||| || ||| |||| | |||||||||||||||| |
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| T |
36866265 |
ttcattgacaatggaagcctttacaatattttgcatgaaaagaaacccccaccacccttaacgtggaatgttcggtttaatttagctgttggaattgctc |
36866364 |
T |
|
| Q |
217 |
aaggattagcgcatctgca |
235 |
Q |
| |
|
||||| |||| ||||||| |
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|
| T |
36866365 |
aaggactagcttatctgca |
36866383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 52183 - 52264
Alignment:
| Q |
76 |
actactggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaa |
160 |
Q |
| |
|
||||||||||||||| | | | |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
52183 |
actactggattggagagaactgtggtttagtcttttattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
52264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 31634179 - 31634106
Alignment:
| Q |
84 |
attggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaa |
160 |
Q |
| |
|
||||||| ||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
31634179 |
attggagaggattgtggtttagtcttgtattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
31634106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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