View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_84 (Length: 251)
Name: NF0593_low_84
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_84 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 33701541 - 33701761
Alignment:
| Q |
30 |
tcctcctcatgtttctagtgttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatgggtttcgtt |
129 |
Q |
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| T |
33701541 |
tcctgctcatgtttctagtgttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatgggtttcgtt |
33701640 |
T |
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| Q |
130 |
gcatagattgtgactatagaaagagaaacgnnnnnnnnntatattgagaaagtctagtgttaaggaagatgaaaatgataaaaatgnnnnnnnagatcca |
229 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
33701641 |
gcatagattgtgactatagaaagagaaacgaaaaaaaaaaatattgagaaagtctagtgttaaggaagatgaaaatgataaaaatg-ttttttagatgca |
33701739 |
T |
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| Q |
230 |
catgaaacaatttatataactt |
251 |
Q |
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||||||||| |||||||||||| |
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| T |
33701740 |
catgaaacagtttatataactt |
33701761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 21266989 - 21267112
Alignment:
| Q |
35 |
ctcatgtttctagt-gttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatgggt--ttcgttgc |
131 |
Q |
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|||||||||||||| |||| ||||||| ||||||| ||||||| |||||| ||||| ||||| ||||||| |||||||||| ||||| ||| |||| |
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| T |
21266989 |
ctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttggattaatatggggacttcattgc |
21267088 |
T |
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| Q |
132 |
atagattgtgactatagaaagaga |
155 |
Q |
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| T |
21267089 |
atagattgtggcaagagaaagaga |
21267112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 33714809 - 33714872
Alignment:
| Q |
59 |
tcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatggg |
122 |
Q |
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| T |
33714809 |
tcttggtgttgagattttctattctttagaactttgaatttgttaaattttagattaggatggg |
33714872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 21136654 - 21136735
Alignment:
| Q |
35 |
ctcatgtttctagt-gttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggatta |
115 |
Q |
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||||||||||| || |||| |||||| |||||||| ||||||| |||||| |||| ||||| |||||||||||||||||| |
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| T |
21136654 |
ctcatgtttctggttgtttgatatgtattggtgttgagaatttatattcttcagaactttgaatttgttaaattttggatta |
21136735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 12757 - 12812
Alignment:
| Q |
60 |
cttggtgtttagaatttctattctatagaattttgatcttgttaaattttggatta |
115 |
Q |
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| T |
12757 |
cttgatgttgagaatttgtattctttagaactttgaacttgttaaattttggatta |
12812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 47250 - 47213
Alignment:
| Q |
98 |
ttgttaaattttggattaggatgggtttcgttgcatag |
135 |
Q |
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| T |
47250 |
ttgttaaattttggattaagatgggtttcgttacatag |
47213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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