View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_88 (Length: 237)
Name: NF0593_low_88
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 3572404 - 3572537
Alignment:
| Q |
5 |
caagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggt |
104 |
Q |
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| T |
3572404 |
caagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggt |
3572503 |
T |
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| Q |
105 |
ccagaccgtgtcaaatacttgggtccattctctg |
138 |
Q |
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| T |
3572504 |
ccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 3575688 - 3575821
Alignment:
| Q |
5 |
caagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggt |
104 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||| |
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| T |
3575688 |
caagctttccccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggt |
3575787 |
T |
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| Q |
105 |
ccagaccgtgtcaaatacttgggtccattctctg |
138 |
Q |
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| T |
3575788 |
ccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 3585530 - 3585397
Alignment:
| Q |
5 |
caagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggt |
104 |
Q |
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| T |
3585530 |
caagctttccccttcgactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggt |
3585431 |
T |
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| Q |
105 |
ccagaccgtgtcaaatacttgggtccattctctg |
138 |
Q |
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| T |
3585430 |
ccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 3563741 - 3563840
Alignment:
| Q |
37 |
tgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctc |
136 |
Q |
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|||||||| | || ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3563741 |
tgggaagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc |
3563840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 3569389 - 3569488
Alignment:
| Q |
37 |
tgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaaatacttgggtccattctc |
136 |
Q |
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|||||||| | || |||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| || |||||||| |||||||| |
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| T |
3569389 |
tgggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc |
3569488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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