View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_11 (Length: 473)
Name: NF0594_high_11
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Complemental strand, 4487945 - 4487515
Alignment:
| Q |
30 |
atgatgtgttcaatcacagaggagctctcaaataagtttataattagcaattcggaatatttaacaacattcgctaaatgcaactttttgagaataaata |
129 |
Q |
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| T |
4487945 |
atgatgtgttcaatcacagaggagctctcaaataagtttataattagcaatttggaatatttaataacttgcactaaatgcaactttttgagaataaata |
4487846 |
T |
|
| Q |
130 |
tgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaa |
229 |
Q |
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| T |
4487845 |
tgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaa |
4487746 |
T |
|
| Q |
230 |
agattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagc |
329 |
Q |
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| T |
4487745 |
aggttgccgtatgtggattttacagtgccatatgcagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagc |
4487646 |
T |
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| Q |
330 |
catttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccagagtttcagct |
429 |
Q |
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| T |
4487645 |
catttaccttggaattatggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccagagtttcagct |
4487546 |
T |
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| Q |
430 |
cagcacagctctttggtttaccttctcctct |
460 |
Q |
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| T |
4487545 |
cagtacagctctttggtttaccttctcctct |
4487515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 141 - 426
Target Start/End: Complemental strand, 4482855 - 4482570
Alignment:
| Q |
141 |
tattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgta |
240 |
Q |
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| T |
4482855 |
tattgattgggactttttgtttatgtttggttaaacaatgatggaagacttacgacgcttttgttggggacacggccataatagaggaaagattgaggta |
4482756 |
T |
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| Q |
241 |
tgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttg |
340 |
Q |
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| T |
4482755 |
tgtggattttacattgccatatgcagaatcaggattgtcgatgatagttccattgaagacggaagattcagcatggatgtttatgaagccatttacctgg |
4482656 |
T |
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| Q |
341 |
gaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccagagtttca |
426 |
Q |
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| T |
4482655 |
gaattgtggctgggtacaggtgcaatcttgatttacacaatgtgtgttgtttggtatctagagagagtacccaacccagagtttca |
4482570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 4482553 - 4482516
Alignment:
| Q |
425 |
cagctcagcacagctctttggtttaccttctcctctct |
462 |
Q |
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| T |
4482553 |
cagctcagcacagctctttggtttaccttctcttctct |
4482516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 34606351 - 34606591
Alignment:
| Q |
186 |
agacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgat |
285 |
Q |
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| T |
34606351 |
agacttatgacggtgttgttggcgacatgaccatactggcagagagattgcaatatgtagattttactgtgccatatgcagagtcaggattgtcgatgat |
34606450 |
T |
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| Q |
286 |
agttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgtta |
385 |
Q |
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| T |
34606451 |
agttacggagaagtctgaagaatcagcatggatgtttatgaagcccttcacctggcaaatgtgggtggtaactggtgtcatcttgatttatacaatggta |
34606550 |
T |
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| Q |
386 |
gttgtttggtatctcgagagagaaccgaacccagagtttca |
426 |
Q |
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| T |
34606551 |
gtagtgtggtacctggagagggaagataatccagagtttca |
34606591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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