View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_12 (Length: 470)
Name: NF0594_high_12
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 8458758 - 8458324
Alignment:
| Q |
13 |
aatatgtacctccataacatgatcagaggggaagggccagtgagcctgcacagagagtgaatcaagagcatgagtttaggattttaatcggaaaatgcaa |
112 |
Q |
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| T |
8458758 |
aatatgtacctccataacatgatcagaggggaagggccagtgagcctgcacagagagtgaatcaagagcatgagtttaggattttaatcggaaaatgcaa |
8458659 |
T |
|
| Q |
113 |
tgtgttattgccnnnnnnnnnnnnnnnnnngaaggtataagtaaaatgatgtagaagaaaatgtcatattcgcagtgggtaa------ccttattaatca |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
8458658 |
tgtgttattgccaaaaaaattataaaaaaagaaggtataagtaaaatgatgtagaagaaaatgtcatattcgcagtggttaaaaggcaccttattaatca |
8458559 |
T |
|
| Q |
207 |
gtaacctttaaacctaaatatcccttctattccttaatatttcaattcacatagcaaaatttatttccaaatgcaaaattaattttacataaatcaatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458558 |
gtaacctttaaacctaaatatcccttctattccttaatatttcaattcacatagcaaaatttatttccaaatgcaaaattaattttacataaatcaatta |
8458459 |
T |
|
| Q |
307 |
taccataaccaggcttgtagtttccatacgaaataagaaaaatgcatataaatttgcgctgaccatacacacccccacttgagcatgtatttcagtgtgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458458 |
taccataaccaggcttgtagtttccatacgaaataagaaaaatgcatataaagttgcgctgaccatacacacccccacttgagcatgtatttcagtgtgt |
8458359 |
T |
|
| Q |
407 |
tattttgagaaatagtgaactaagaacctgagttg |
441 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
8458358 |
tattttgagaaatagtgaactaaaaacctgagttg |
8458324 |
T |
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