View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_22 (Length: 367)
Name: NF0594_high_22
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 20994533 - 20994262
Alignment:
| Q |
30 |
gtaacaattgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994533 |
gtaacaattgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaag |
20994434 |
T |
|
| Q |
130 |
tgtgacgcttgtcaattttactacgtacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtatt |
229 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994433 |
tgtgacgcttgtcaattttaccacatacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtatt |
20994334 |
T |
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| Q |
230 |
ccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaagtagattca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
20994333 |
ccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagatattcatgcagaagtaaattca |
20994262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 20981383 - 20981118
Alignment:
| Q |
30 |
gtaacaattgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaag |
129 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
20981383 |
gtaacaattgcgctgaaccattttctaactttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaa------ctttgtatatcaag |
20981290 |
T |
|
| Q |
130 |
tgtgacgcttgtcaattttactacgtacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtatt |
229 |
Q |
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| T |
20981289 |
tgcgacgcttgttaattttacgatgtacaatcactcggaagacttttacatgattgagctatgcactccaagtctttgtgcgtttacttttaatggtact |
20981190 |
T |
|
| Q |
230 |
ccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaagtagattca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
20981189 |
ccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaaatacattca |
20981118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 20978050 - 20978169
Alignment:
| Q |
182 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagata |
281 |
Q |
| |
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||||| ||| || |||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||||||||||||||||||||||||||| |
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| T |
20978050 |
attgatctacgtgctccaagtctttgtacttttactttttatggtactccttatcagaatatatctgggggcgatatttcttctcttaaacatgtagata |
20978149 |
T |
|
| Q |
282 |
tccatgcagaagtagattca |
301 |
Q |
| |
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| |||||||||||||||||| |
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|
| T |
20978150 |
tgcatgcagaagtagattca |
20978169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 25602335 - 25602397
Alignment:
| Q |
177 |
acaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcaga |
239 |
Q |
| |
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|||| ||||| |||| ||||||||||||| |||| ||||||| |||||||| ||||| ||||| |
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| T |
25602335 |
acaaaattgaactatctactccaagtcttcgtacctttacttataatggtagtccttctcaga |
25602397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 3978705 - 3978837
Alignment:
| Q |
172 |
ctattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaa |
271 |
Q |
| |
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||||||| | ||||| ||||||||||||||||||| | |||| ||||| |||| |||||||| ||| | |||||||| |||||||||||||||| |
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| T |
3978705 |
ctattacgaaattgatttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagcagtatttcttctcttaaa |
3978804 |
T |
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| Q |
272 |
catgtagatatccatgcagaagtagattcaagt |
304 |
Q |
| |
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||||||||||| ||||||||||||| |||||| |
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| T |
3978805 |
catgtagatattgatgcagaagtagagtcaagt |
3978837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 36636402 - 36636352
Alignment:
| Q |
182 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattcct |
232 |
Q |
| |
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|||||| ||||| |||||||||||||||| |||||||||| ||||| |||| |
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| T |
36636402 |
attgagttatgtgctccaagtctttgtacctttacttttactggtactcct |
36636352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 36643055 - 36643013
Alignment:
| Q |
185 |
gagctatgtactccaagtctttgtacgtttacttttaatggta |
227 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| ||||| |
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|
| T |
36643055 |
gagctatctactccaagtctttgtacatttacttttattggta |
36643013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 3978649 - 3978685
Alignment:
| Q |
116 |
ctccgcatatcaagtgtgacgcttgtcaattttacta |
152 |
Q |
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|||||||||||||||||||| ||||||||||| |||| |
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| T |
3978649 |
ctccgcatatcaagtgtgacccttgtcaatttaacta |
3978685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 7976281 - 7976184
Alignment:
| Q |
182 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagata |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||| | || ||||| || |||||||||||||||||||||||| |
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|
| T |
7976281 |
attgagctatgtactccaagtctttgtacgtttgcttttatcggtagtcc---tcagaaactctccaggagctatgtttcttctcttaaacatgtagata |
7976185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 44500926 - 44500819
Alignment:
| Q |
175 |
ttacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacat |
274 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||| |||| ||||| ||||| || |||||||| | ||| |||||| |||||||||||||||| |
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|
| T |
44500926 |
ttacaacattgatctaagtactccaagtctttgtaagtttgtttttactggtagtcattatcagaatctttctggaagcaatgcttcttctcttaaacat |
44500827 |
T |
|
| Q |
275 |
gtagatat |
282 |
Q |
| |
|
|||||||| |
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|
| T |
44500826 |
gtagatat |
44500819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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