View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_23 (Length: 356)
Name: NF0594_high_23
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 941786 - 941930
Alignment:
| Q |
18 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
117 |
Q |
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| T |
941786 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
941885 |
T |
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| Q |
118 |
ttgacatactagtcctttttcactaactctcgaattcttcgaacc |
162 |
Q |
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| T |
941886 |
ttgacatactagtcctttttcactaactctcgaattcttcgaacc |
941930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 941762 - 941678
Alignment:
| Q |
177 |
ctcatccttcacaatattcatttggatgagttgaagatctcttagttgatgatacctctgaagtcacttcccctaggcttgttat |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
941762 |
ctcatccttcacaatattcatttggatgagttgaagatctcttagttgatgatacctctgaagtcacttcccctaggcttgttat |
941678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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