View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_high_24 (Length: 347)

Name: NF0594_high_24
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_high_24
NF0594_high_24
[»] chr1 (4 HSPs)
chr1 (11-340)||(9558079-9558392)
chr1 (57-230)||(29076774-29076946)
chr1 (120-229)||(14968591-14968700)
chr1 (18-78)||(10656318-10656380)
[»] scaffold0010 (1 HSPs)
scaffold0010 (120-229)||(137108-137217)
[»] chr7 (1 HSPs)
chr7 (188-230)||(24141243-24141285)
[»] chr5 (1 HSPs)
chr5 (37-86)||(19903523-19903572)
[»] chr3 (1 HSPs)
chr3 (11-100)||(20648678-20648767)
[»] chr2 (2 HSPs)
chr2 (34-146)||(25564018-25564130)
chr2 (37-78)||(26704536-26704577)
[»] scaffold1190 (1 HSPs)
scaffold1190 (120-160)||(1323-1363)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 9558392 - 9558079
Alignment:
Q  11 cagagatgttgaaatattgtcttaaatggttaatgtcgttgaatattcatttgaaattcatttgcttcaattgaaaagatttgttacattttatcatgcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||    
T  9558392 cagagatgttgaaatattgtcttaaatggttaatgtcgttgaatattcatttgaaattcatttgcttcaattgaaaagatttgttacattctatttatcc 9558293  T
Q  111 ttaaatttatttgtttgtttctgcacgtggtcagaatgtgacaaactgtacaattcagagtttgactatgaccttccttcaaaagatgacaaaacaagtc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||| |||||||||| |||||||||||||    
T  9558292 ttaaatttatttgtttgtttctgcacgtggtcaaaatgtgacaaattgtacacttcagagtttgattatgacctttcttcaaaagacgacaaaacaagtc 9558193  T
Q  211 agagtcttatgatgttgacacgtcttcagatgctcgaggtcttcagaggtttcacttcttcagatgcttctgaccttcagatgtttctgaatgagattcc 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                ||||||||||||||||||||    
T  9558192 agagtcttatgatgttgacacgtcttcagatgctagaggtcttcagaggtttcacttcttcaga----------------atgtttctgaatgagattcc 9558109  T
Q  311 tctagtgatccaaaagttgactttctgatg 340  Q
     |||||||||||||||||||||||||||||    
T  9558108 cctagtgatccaaaagttgactttctgatg 9558079  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 29076946 - 29076774
Alignment:
Q  57 tcatttgaaattcatttgcttcaattgaaaagatttgttacattttatcatgccttaaatttatttgtttgtttctgcacgtggtcagaatgtgacaaac 156  Q
    |||||||||||||||||||||||| |||||  ||| ||| ||||| ||    |||| ||||  |||||||||||||||||||| | ||||   || |||     
T  29076946 tcatttgaaattcatttgcttcaaatgaaattattcgtttcatttcatttgtccttgaattgttttgtttgtttctgcacgtgtttagaagaagataaat 29076847  T
Q  157 tgtacaattcagagtttgactatgaccttccttcaaaagatgacaaaacaagtcagagtcttatgatgttgaca 230  Q
    | ||| | ||||||| |||  ||||||||||| ||||||| ||||||||| || |||| ||| ||||| |||||    
T  29076846 tatacta-tcagagtctgataatgaccttcctacaaaagacgacaaaacatgttagaggcttttgatgctgaca 29076774  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 14968700 - 14968591
Alignment:
Q  120 tttgtttgtttctgcacgtggtcagaatgtgacaaactgtacaattcagagtttgactatgaccttccttcaaaagatgacaaaacaagtcagagtctta 219  Q
    ||||||| | ||| |||||||| |||| |||||||||| ||| || ||||||||||   ||||||||||||| |||| ||| |||| ||||| | ||||     
T  14968700 tttgtttttatctacacgtggttagaaggtgacaaactttactatccagagtttgatagtgaccttccttcagaagacgactaaaccagtcataatcttc 14968601  T
Q  220 tgatgttgac 229  Q
    ||||| ||||    
T  14968600 tgatgctgac 14968591  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10656318 - 10656380
Alignment:
Q  18 gttgaaatattgtcttaaatggttaat--gtcgttgaatattcatttgaaattcatttgcttc 78  Q
    |||||||| ||||||||||||| ||||  ||||||||||| | ||| ||||||||||||||||    
T  10656318 gttgaaatgttgtcttaaatggataattcgtcgttgaatagttattcgaaattcatttgcttc 10656380  T

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Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 137108 - 137217
Alignment:
Q  120 tttgtttgtttctgcacgtggtcagaatgtgacaaactgtacaattcagagtttgactatgaccttccttcaaaagatgacaaaacaagtcagagtctta 219  Q
    ||||||||| |||||||||||| |||| |||||||| ||||| ||||||||| |||    |||||||||||| ||||  ||||||  | || ||||||||    
T  137108 tttgtttgtatctgcacgtggtgagaaggtgacaaattgtactattcagagtctgatagcgaccttccttcagaagacaacaaaatcaatcggagtctta 137207  T
Q  220 tgatgttgac 229  Q
    ||||||||||    
T  137208 tgatgttgac 137217  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 24141285 - 24141243
Alignment:
Q  188 ttcaaaagatgacaaaacaagtcagagtcttatgatgttgaca 230  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  24141285 ttcaaaagatgacaaaactagtcagagtcttctgatgttgaca 24141243  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 19903523 - 19903572
Alignment:
Q  37 tggttaatgtcgttgaatattcatttgaaattcatttgcttcaattgaaa 86  Q
    ||||||||||| |||||  |||||||||||||| ||||||||||||||||    
T  19903523 tggttaatgtcattgaaagttcatttgaaattcctttgcttcaattgaaa 19903572  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 20648678 - 20648767
Alignment:
Q  11 cagagatgttgaaatattgtcttaaatggttaatgtcgttgaatattcatttgaaattcatttgcttcaattgaaaagatttgttacatt 100  Q
    ||||||||||||||| | |||| ||||||| ||||||||||| || ||||| ||||||  ||||||| || |  || |||||||||||||    
T  20648678 cagagatgttgaaatgtggtctcaaatggtcaatgtcgttgagtagtcattcgaaatttctttgctttaaatagaatgatttgttacatt 20648767  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 25564130 - 25564018
Alignment:
Q  34 aaatggttaatgtcgttgaatattcatttgaaattcatttgcttcaattgaaaagatttgttacattttatcatgccttaaatttatttgtttgtttctg 133  Q
    ||||||||||||||||||| || ||||| ||||||||||| |||||| |  || |||||||| |||| | |      || ||||| |||||||||||||     
T  25564130 aaatggttaatgtcgttgagtagtcattcgaaattcattttcttcaaatagaatgatttgttgcattctctttgtttttgaatttctttgtttgtttcta 25564031  T
Q  134 cacgtggtcagaa 146  Q
    |||||||||||||    
T  25564030 cacgtggtcagaa 25564018  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 26704536 - 26704577
Alignment:
Q  37 tggttaatgtcgttgaatattcatttgaaattcatttgcttc 78  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  26704536 tggttaatgtcgttgaatagtcatttgaaatttctttgcttc 26704577  T

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Target: scaffold1190 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 1323 - 1363
Alignment:
Q  120 tttgtttgtttctgcacgtggtcagaatgtgacaaactgta 160  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  1323 tttgtttgtttctgcacgtggtcagaagaggacaaactgta 1363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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