View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_high_29 (Length: 301)

Name: NF0594_high_29
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_high_29
NF0594_high_29
[»] chr1 (8 HSPs)
chr1 (58-197)||(9557065-9557205)
chr1 (210-286)||(9557241-9557317)
chr1 (209-283)||(34775205-34775279)
chr1 (205-286)||(9313011-9313092)
chr1 (203-276)||(27102509-27102582)
chr1 (232-283)||(17033950-17034001)
chr1 (210-285)||(27905766-27905840)
chr1 (210-269)||(38544404-38544463)
[»] chr3 (6 HSPs)
chr3 (207-286)||(4171075-4171154)
chr3 (205-286)||(50518760-50518841)
chr3 (205-283)||(48893027-48893105)
chr3 (207-286)||(14893261-14893340)
chr3 (216-284)||(37123710-37123778)
chr3 (206-286)||(25648013-25648093)
[»] chr5 (8 HSPs)
chr5 (205-283)||(26405222-26405300)
chr5 (205-286)||(25992330-25992411)
chr5 (209-286)||(26045634-26045711)
chr5 (209-276)||(13953929-13953996)
chr5 (209-268)||(30097666-30097725)
chr5 (205-279)||(7194979-7195053)
chr5 (205-247)||(37108128-37108170)
chr5 (205-286)||(8297800-8297880)
[»] chr2 (9 HSPs)
chr2 (205-286)||(7696290-7696371)
chr2 (205-267)||(34230530-34230592)
chr2 (205-286)||(13337579-13337660)
chr2 (203-286)||(37770324-37770404)
chr2 (209-285)||(41113412-41113488)
chr2 (209-276)||(4472276-4472343)
chr2 (205-283)||(29139624-29139702)
chr2 (218-286)||(29997287-29997355)
chr2 (232-264)||(40360652-40360684)
[»] chr6 (3 HSPs)
chr6 (206-286)||(3880283-3880363)
chr6 (205-268)||(6860360-6860425)
chr6 (218-286)||(17278133-17278201)
[»] chr4 (6 HSPs)
chr4 (216-285)||(42719496-42719565)
chr4 (208-276)||(16832701-16832769)
chr4 (232-276)||(35947988-35948032)
chr4 (209-265)||(49747861-49747917)
chr4 (241-283)||(9262808-9262850)
chr4 (216-276)||(48098646-48098706)
[»] scaffold0050 (1 HSPs)
scaffold0050 (209-286)||(37040-37117)
[»] scaffold1613 (1 HSPs)
scaffold1613 (210-269)||(683-742)
[»] chr7 (5 HSPs)
chr7 (232-286)||(6726090-6726144)
chr7 (208-286)||(42532930-42533008)
chr7 (218-283)||(16828774-16828839)
chr7 (207-268)||(22567781-22567841)
chr7 (207-276)||(39013573-39013642)
[»] chr8 (1 HSPs)
chr8 (209-276)||(10248246-10248314)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 9557065 - 9557205
Alignment:
Q  58 tagcctgtgtctctcgagcaattaattgccagttttagcctttttctctagatagcaatatataacacacaaaactgggccgcttggacatgcacccata 157  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9557065 tagcctgtgtctctcaagcaattaattgccagttttagcctttttctctagatagcaatatataacacacaaaactgggccgcttggacatgcacccata 9557164  T
Q  158 ataaagcaa-catctgaattaattgaatcagcaactgggtg 197  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  9557165 ataaagcaaccatctgaattaattgaatctgcaactgggtg 9557205  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 9557241 - 9557317
Alignment:
Q  210 ttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||||||||||||||  | |||| || |||||||||| || |||| |||||||||||||||||| |||||||||    
T  9557241 ttttaaggtgtttattttcgggtgtttcgtttatatacgatgttttttatttgtattctcagattcaccggtctctg 9557317  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 34775205 - 34775279
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    |||||||||||||||||||  | |||||||| |||||||| || |||| |||||||||||||| || ||||||||    
T  34775205 tttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtct 34775279  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 9313092 - 9313011
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||| ||||||||||||  | |||||||| ||||||||||| |||||| ||||||| | || |||| |||||||||    
T  9313092 ggtgtttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctg 9313011  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 27102509 - 27102582
Alignment:
Q  203 atggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    |||||||||||| ||||||||||||  | |||||||| |||||||| |  ||||||||||||||||||| ||||    
T  27102509 atggtgtttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcaggttca 27102582  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 17033950 - 17034001
Alignment:
Q  232 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    |||||||||||||||||||| |||||||||||||| || || ||| ||||||    
T  17033950 tgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtct 17034001  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 27905766 - 27905840
Alignment:
Q  210 ttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctct 285  Q
    ||||| ||||||||||||||| |||||| | ||||||||||| || | ||||||| |||| |||||| ||||||||    
T  27905766 ttttatggtgtttattttttg-tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctct 27905840  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 38544463 - 38544404
Alignment:
Q  210 ttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctc 269  Q
    ||||| ||||||||||||  | |||||| | |||||||||||||||| ||||||||||||    
T  38544463 ttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctc 38544404  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 4171075 - 4171154
Alignment:
Q  207 tgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||| ||||||||||||  | |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||    
T  4171075 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctg 4171154  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 50518841 - 50518760
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||| ||||||||||||  | |||||||| ||||||||||  ||||||||||||||||||| |||| | |||||||    
T  50518841 ggtgtttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctg 50518760  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 48893105 - 48893027
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    ||||||||||| |||||||||||  | |||||| |||||||||| | || ||||||||||||||||| |||||| ||||    
T  48893105 ggtgtttttaaagtgtttattttcggatgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgtct 48893027  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 14893261 - 14893340
Alignment:
Q  207 tgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||| ||||||||||||  | |||||||| |||||||| ||||||||||||||| |||| | |||| | |||||||    
T  14893261 tgtttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctg 14893340  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 37123710 - 37123778
Alignment:
Q  216 ggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctc 284  Q
    ||||||||||||  | |||||||  ||| || |||| ||||||||||||||||||| ||||||||||||    
T  37123710 ggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtattctcagtttcatcggtctc 37123778  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 25648013 - 25648093
Alignment:
Q  206 gtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||||| ||||||||||||  | |||||||  |||||||  || |||||||||||||||| || |||| || ||||||    
T  25648013 gtgtttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctg 25648093  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 26405300 - 26405222
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    |||||||||||||||||||||||  | |||||||  ||||||||||| ||||||||||||||||||| |||| ||||||    
T  26405300 ggtgtttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtct 26405222  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 25992330 - 25992411
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||| |||||||||| |  | |||||||| |||||||| || |||||||||||||| |||  |||| |||||||||    
T  25992330 ggtgtttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctg 25992411  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 26045711 - 26045634
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||| ||||||||||||| | |||||||  |||||||| || ||||||||||||| ||||  |||| |||||||||    
T  26045711 tttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctg 26045634  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 13953996 - 13953929
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    |||||||||||||||||||  | |||||||| |||||||| || |||| ||||||| |||||| ||||    
T  13953996 tttttaaggtgtttattttcaggtgttccgcctatatacggcgcctttagtttgtactctcagtttca 13953929  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 30097666 - 30097725
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattct 268  Q
    |||||| ||||||||||||  | |||||||| |||||||| ||||||| |||||||||||    
T  30097666 tttttagggtgtttattttcgggtgttccgcctatatacggcgtctttagtttgtattct 30097725  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 7195053 - 7194979
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcg 279  Q
    |||||||||| ||||||||||||| | |||||||| |||| |||||   |||||| | ||||||||| |||||||    
T  7195053 ggtgtttttagggtgtttatttttggatgttccgcatataaacgactcattttgtctatattctcagtttcatcg 7194979  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 37108128 - 37108170
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatac 247  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  37108128 ggtgtttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 8297800 - 8297880
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||| ||||| ||||||  | |||||||| ||| ||| ||| ||||| ||||||||||||| |||| |||||||||    
T  8297800 ggtgtttttagggtgtgtattttcaggtgttccgcctatgtacaacgcctttt-tttgtattctcagtttcaccggtctctg 8297880  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 7696290 - 7696371
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||||||||||||||||| | |||||||| ||||||||    ||||||||||||||||||  ||||||||||||||    
T  7696290 ggtgtttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctg 7696371  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 34230530 - 34230592
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattc 267  Q
    |||||||||| | ||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  34230530 ggtgtttttacgatgtttattttttggtgttccgcctatatacggcgtcttttgtttgtattc 34230592  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 13337579 - 13337660
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||| ||||||||||||  | |||||| | ||||||||||| ||||||||||||||||| | |||| |||||||||    
T  13337579 ggtgtttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctg 13337660  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 37770404 - 37770324
Alignment:
Q  203 atggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||||||| ||||||||||||  | |||||||| |||||||||||    ||||||||||||||| ||||| || ||||||    
T  37770404 atggtgtttttagggtgtttattttcgggtgttccgcctatatacgacg---cttgtttgtattctcatattcaccgatctctg 37770324  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 41113488 - 41113412
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctct 285  Q
    |||||| ||| ||||||||  | |||||||| ||||||| | |||||| |||||||||||||| |||| ||||||||    
T  41113488 tttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctct 41113412  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 4472276 - 4472343
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    |||||| ||||||||||||  | |||||||  ||||||||||| |||| |||||||||||| ||||||    
T  4472276 tttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattca 4472343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 29139702 - 29139624
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    |||||||||||||| ||||||||    |||||| || |||||||||| ||||| ||||||| ||||| |||| ||||||    
T  29139702 ggtgtttttaaggtatttattttcgagtgttccactaatatacgacgccttttatttgtatcctcagtttcaccggtct 29139624  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 29997287 - 29997355
Alignment:
Q  218 tgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||||||  | |||||||||||||||||  | ||||||||| |||| |||  ||||||||||||||    
T  29997287 tgtttattttcggatgttccgcttatatacggtgccttttgtttttattttcaatttcatcggtctctg 29997355  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 40360684 - 40360652
Alignment:
Q  232 tgttccgcttatatacgacgtcttttgtttgta 264  Q
    |||||||| ||||||||||||||||||||||||    
T  40360684 tgttccgcctatatacgacgtcttttgtttgta 40360652  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 3880363 - 3880283
Alignment:
Q  206 gtgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    |||||||||||||| |||| |||| |||||||||    
T  3880363 gtgtttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctg 3880283  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 6860360 - 6860425
Alignment:
Q  205 ggtgtttttaaggtgtttattttttgctgttccgct--tatatacgacgtcttttgtttgtattct 268  Q
    |||||||||| ||||||||||||| | ||||||||   |||||||| |||||||||||||||||||    
T  6860360 ggtgtttttagggtgtttatttttgggtgttccgcccctatatacggcgtcttttgtttgtattct 6860425  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 17278201 - 17278133
Alignment:
Q  218 tgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||||||  | |||||||| ||||||||||| |||| | |||||||||| || ||| |||||||||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctg 17278133  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 42719496 - 42719565
Alignment:
Q  216 ggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctct 285  Q
    ||||||||||||  | | ||||||||||||||| |||||||||||||||||||||| |||| ||||||||    
T  42719496 ggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctct 42719565  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 16832769 - 16832701
Alignment:
Q  208 gtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    ||||||| ||||||||||||||| |||||||| ||||| |  || ||||||||||||||||||| ||||    
T  16832769 gtttttagggtgtttattttttggtgttccgcctatatgcagcgccttttgtttgtattctcagtttca 16832701  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 35948032 - 35947988
Alignment:
Q  232 tgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  35948032 tgttccgcttatatatggcgtcttttgtttgtattctcagattca 35947988  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 49747861 - 49747917
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtat 265  Q
    |||||| ||||||||||||| | |||||||| ||||||||| |||||||||||||||    
T  49747861 tttttatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtat 49747917  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 9262808 - 9262850
Alignment:
Q  241 tatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  9262808 tatatacggcgccttttgtttgtattctcagtttcatcggtct 9262850  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 48098646 - 48098706
Alignment:
Q  216 ggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    ||||||||||||  | |||||||| |||||||  ||||||||||||||||| |||| ||||    
T  48098646 ggtgtttattttcgggtgttccgcctatatactgcgtcttttgtttgtattttcagtttca 48098706  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 37040 - 37117
Alignment:
Q  209 tttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||| ||||||||||||  | |||||||| |||||||  ||||||||||||||||| |||| |||| |||||||||    
T  37040 tttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctg 37117  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 742 - 683
Alignment:
Q  210 ttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctc 269  Q
    ||||| ||||||||||||  | |||||| | |||||||||||||||| ||||||||||||    
T  742 ttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctc 683  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 6726144 - 6726090
Alignment:
Q  232 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    |||||||| |||||||| ||| |||||||||||||||||| |||| || ||||||    
T  6726144 tgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctg 6726090  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 42533008 - 42532930
Alignment:
Q  208 gtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctg 286  Q
    ||||||| |||||||||||   | |||||||| |||||||| || |||||| |||||||||||| | || |||||||||    
T  42533008 gtttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctg 42532930  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 16828839 - 16828774
Alignment:
Q  218 tgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtct 283  Q
    ||||||||||  | |||||||| |||||||| ||  |||||||||||||||||| |||| ||||||    
T  16828839 tgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtct 16828774  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 22567841 - 22567781
Alignment:
Q  207 tgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattct 268  Q
    |||||||| ||||| | ||||||| |||||||| |||||||| || ||||||||||||||||    
T  22567841 tgtttttatggtgtgttttttttg-tgttccgcctatatacggcgccttttgtttgtattct 22567781  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 39013573 - 39013642
Alignment:
Q  207 tgtttttaaggtgtttattttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    |||||| | ||||||||||||| | | |||||  ||||||| |||||| |||||||||||||||| ||||    
T  39013573 tgttttcagggtgtttatttttaggtattccgtctatatacaacgtctcttgtttgtattctcagtttca 39013642  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 10248314 - 10248246
Alignment:
Q  209 tttttaaggtgtttattttttgc-tgttccgcttatatacgacgtcttttgtttgtattctcagattca 276  Q
    |||||||||||||| ||||| |  |||||||| ||||||||||| |||| | |||||||||||| ||||    
T  10248314 tttttaaggtgtttttttttagggtgttccgcctatatacgacgcctttaggttgtattctcagtttca 10248246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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