View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_3 (Length: 673)
Name: NF0594_high_3
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 142 - 578
Target Start/End: Original strand, 9681891 - 9682327
Alignment:
| Q |
142 |
acctttggggtacaaagtggatctgtaaacaatatttgtccctcattaccaatttcccatccaagtccactgtacaaaacataattcaacaaatcctcca |
241 |
Q |
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| T |
9681891 |
acctttggggtacaaagtggatctgtaaacaatatttgtccctcattaccaatttcccatccaagtccactgtacaaaacataattcaacaaatcctcca |
9681990 |
T |
|
| Q |
242 |
tagcatcccaatctctaacataacctcttaccaccggctcaaccgcgacatcatccaccaccaactgaccattaccattatcatttgtttcatcaaccat |
341 |
Q |
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| T |
9681991 |
tagcatcccaatctctaacataacctcttaccactggctcaaccgcgacatcatccaccaccaactgaccattaccattatcatttgtttcatcaaccat |
9682090 |
T |
|
| Q |
342 |
tcgtttcatctgactaggaattatctgaacccacaaatacaaaaacatcaaaaacaatcacaattagagatacacattgctgatttcgagaaaggagaat |
441 |
Q |
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| T |
9682091 |
tcgtttcatctgactaggaattatctgaacccacaaatacaaaaacatcaaaaacaatcacaattagagatacacattgctgatttcgagaaaggagaat |
9682190 |
T |
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| Q |
442 |
tgaaaggggggtattgttaccatggcaggagtttgatcgggaatagcaaatccggctttgaggagactggaaccggcatcaattactgcagcttccatgg |
541 |
Q |
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| T |
9682191 |
tgaaaggggggtattgttaccatggcaggagtttgatcgggaatagcaaatccggctttgaggagactggaaccggcatcaattactgcagcttccatgg |
9682290 |
T |
|
| Q |
542 |
ctgtgaacagaggcggatctagacatttagtctatgt |
578 |
Q |
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| T |
9682291 |
ctgtgaacagaggcggatctagacatttagtctatgt |
9682327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9681750 - 9681819
Alignment:
| Q |
1 |
gcttcatcgaacaaaacaggttgcaaaatcacaatgcagtaaacattcaatcaagctgaacataagataa |
70 |
Q |
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| T |
9681750 |
gcttcatcgaacaaaacaggttgcaaaatcacaatgcagtacacattcaatcaagctgaacataagataa |
9681819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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