View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0594_high_4 (Length: 666)
Name: NF0594_high_4
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 637
Target Start/End: Complemental strand, 8058310 - 8057684
Alignment:
| Q |
11 |
caaaggcaaagtaactaattaacatggtcatattctactaaactcatggcaaaaatatatgtagagactagagtttgaattccggattctccaccgattc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||| |||| |
|
|
| T |
8058310 |
caaaggcaaagtaactaattaacatggtcatattctactaaacccatggcaaaaatatatgtagagactaaagttcgaattccggattcttcactaattc |
8058211 |
T |
|
| Q |
111 |
accttaaagtgaaagttagtcactaaactacttgataaggaaaaaccacaagaatctaaatatatagacatgttccattacaagacctaaagaaaccaca |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
8058210 |
accttaaagtgaaatctagtcactaaactacttgataagaaaaaaccacaagaatctaaatatattgacatgttccattacaagacctaaagaaacctca |
8058111 |
T |
|
| Q |
211 |
aaccaacttaatagattaaaaagtgcaaccactgcttagcctttctctgatctggaatttgtcaaacatcaacgttctttcttcttcctctccccatttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8058110 |
aaccaacttaatagattaaaaagtgcaaccactgcttagtctttctctgatctggaatttgtcaaacatcaacgttctttcttcttcctctccccatttt |
8058011 |
T |
|
| Q |
311 |
caataacattcagcaaaactttggcaccgtgtttctcccacacaggttttccattcatgtctttcatttgaagctcaagattattcacgtagaacccatc |
410 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8058010 |
caataacattcagcaaaactttggtaccgtgtttctcccacacagattttccattcatgtctttcatttgaagctcaagattattcacgtagaacccatc |
8057911 |
T |
|
| Q |
411 |
atctccacctttccgatggcacgcgaccttcaccttacacttcatcatctccgtataatcctcagatagccccagcatcatggtctcgtacactacctta |
510 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8057910 |
atctccacctttccgatggcacgtgaccttcaccttacacttcaccatctccgtataatcctcagatagccccggcatcatggtctcgtacactacctta |
8057811 |
T |
|
| Q |
511 |
gtctctaaagaggctgaaacatgtttaactgaaacaggtttaacactagaacaaaacaagctccctgcacgcttttgatgagtctcgataaccacccaac |
610 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8057810 |
gtctctaaagaggctgaaacatgttcaactgaaacaggtttaacactagaacaaaacaagctccctgcacgcttttgatgagtctcgataaccacccaac |
8057711 |
T |
|
| Q |
611 |
tcaacctcaaattttctttcaaatatt |
637 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
8057710 |
tcaacctcaaattttctttcaagtatt |
8057684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 7500304 - 7500346
Alignment:
| Q |
595 |
tcgataaccacccaactcaacctcaaattttctttcaaatatt |
637 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
7500304 |
tcgataactacccaactcaacctcaaattttcatgcaaatatt |
7500346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 637
Target Start/End: Complemental strand, 27257881 - 27257797
Alignment:
| Q |
553 |
acactagaacaaaacaagctccctgcacgcttttgatgagtctcgataaccacccaactcaacctcaaattttctttcaaatatt |
637 |
Q |
| |
|
||||||||||||||||| | ||||||||||| || | |||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
27257881 |
acactagaacaaaacaactttgctgcacgctttcgagttggatcgataacaacccaactcaacctcaaattttcttgcaaatatt |
27257797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 48 times since January 2019
Visitors: 3831