View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_40 (Length: 207)
Name: NF0594_high_40
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 29503865 - 29504058
Alignment:
| Q |
1 |
ttgattactttataatggttctagacacttgagtgtgtctacggcataacatttagaaattggagggtgaatgttgttaaggaatgttgttttaagttgc |
100 |
Q |
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| T |
29503865 |
ttgattactttataatggttctagacacttgagtgtgtctacggcataacatttagaaattggagggtgaatgttgttaaggaatgttgttttaagttgc |
29503964 |
T |
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| Q |
101 |
caattttattcatattatagtgatgtaatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgattt |
194 |
Q |
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| T |
29503965 |
caattttgttcatattatagtgatgtaatgcactgattcatgcctatggtaaatgtaaatttgttgagggtacgagacgtgtttttgatgattt |
29504058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 33899399 - 33899466
Alignment:
| Q |
127 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgattt |
194 |
Q |
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| T |
33899399 |
aatgcattgattcatgcttgtggcaaatgtaaatgcgttgagggtgcgagatatgtttttgatgattt |
33899466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 34637386 - 34637321
Alignment:
| Q |
127 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgat |
192 |
Q |
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| T |
34637386 |
aatgcattgattcatgcatatggtaaatgtaaatgcgttgagggtgaaagacgtgtttttgatgat |
34637321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 13794892 - 13794825
Alignment:
| Q |
127 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgattt |
194 |
Q |
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| T |
13794892 |
aatgcattcattcatgcctatggtaaatgtaaatgtgttgagggtgcgagacgtgtttttgatgattt |
13794825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 28742259 - 28742326
Alignment:
| Q |
127 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgattt |
194 |
Q |
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| T |
28742259 |
aatgcgttgattcatgcttatggtaaatgtaaatgtgttgagggtgcgagacgtgtttttgatgattt |
28742326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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