View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_8 (Length: 565)
Name: NF0594_high_8
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 100 - 555
Target Start/End: Complemental strand, 3974339 - 3973884
Alignment:
| Q |
100 |
tggcagttggatctccttttggaatcctctcacctacacatttctttaacaggtattattttctagtttggctaaaagaagnnnnnnntagttagaataa |
199 |
Q |
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| T |
3974339 |
tggcagttggatctccttttggaatcctctcacctacacatttctttaacaggtattattttctagtttggctaaaagaagaaaaaaatagttagaataa |
3974240 |
T |
|
| Q |
200 |
cctaatctggttgttactcacaaaatggtaacttcccatggtaaattttcataatcaccttgatgtaacatgctctttgtcattatttgtcaactttttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3974239 |
cctaatctggttgttactcacaaaatggtaacttcccatggtaaattttcataatcaccttgatgtaacatgctctttgtcattatttgtcaactttttc |
3974140 |
T |
|
| Q |
300 |
ggtgagctgttggcatcacctatgttttgagctgagttgtacagacttctattttatctaatatataatgctgtggtgaagaactggatatcgatgcttg |
399 |
Q |
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| T |
3974139 |
ggtgagctgttggcatcacctatgttttgagctgagttgtacagacttctattttatctaatatataatgctgtgatgaagaagtggatatcgatgcttg |
3974040 |
T |
|
| Q |
400 |
aaacttttgtatcattcagtcctttgatttggttgcttgcttgaatcagtttatcagttggatgcattgcaaattgttatcctcctaattcatctgatgg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3974039 |
aaacttttgtatcattcagtcctttgatttggttgcttgcttgaatcagtttatcagttggatgcattgcaaattgttatcctcctaattcatctgatgg |
3973940 |
T |
|
| Q |
500 |
atcattgctgatgatggctgacatacgcagtcttcctggtgcgaaccgtttctctg |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3973939 |
atcattgctgatgatggctgacatacgcagtcttcctggtgcgaaccgtttctctg |
3973884 |
T |
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