View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_high_9 (Length: 501)
Name: NF0594_high_9
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 28 - 486
Target Start/End: Complemental strand, 25345278 - 25344811
Alignment:
| Q |
28 |
caaattctgctacaaatgtgggaagaagcgatcatttacatctgcacatacatgcaaatagcagttagtttattattccactgtttcagaggtaactcat |
127 |
Q |
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| T |
25345278 |
caaattctgctacaaatgtgggaagaagcgatcatttacatctgcacatacatgcaaatagcagttagtttattattccactgtttcagag-taactcat |
25345180 |
T |
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| Q |
128 |
ctttcatatataaataaattctatttaataagaaatgactagaaattaaatattttgaattttatgatgatctgttttgtcgtttccattcaatatatac |
227 |
Q |
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| T |
25345179 |
ctttcatatataaataacttctatttaataagaaatgactagaaataaaatattttgaattttatgatgatctgttttgtcgtttccattcaatatatac |
25345080 |
T |
|
| Q |
228 |
act----------ctatttcaattccttgtagtcatcaaaattctttcgacatatggaatgtttatttctctgtatcgatttgttatatgattgtcatga |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25345079 |
actacgccaaactctatttcaattccttgtagtcatcaaaattctttcgacgtatggaatgtttatttctctgtatcgatttgttatatgattgtcatga |
25344980 |
T |
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| Q |
318 |
atgatattgtggcaataagacgcctcgagttacttataccaaggtaattaaaactagatcagcactgaaccggcgtaatcacactggtttacggtttaat |
417 |
Q |
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| T |
25344979 |
atgatattgtggcaataagacgccttgagttacttataccaaggtaattaaaactagatcagcactgaaccggtgtaatcacactggtttacggtttagt |
25344880 |
T |
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| Q |
418 |
cgtttgggttgtcatctatttgcaaaagtacgagctaggctaatttgtttatgaacatttgatattcat |
486 |
Q |
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| T |
25344879 |
cgtttgggttgtcatctatttgcaaaagtacgagctaggcttatttgtttatgaacatttgatattcat |
25344811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 25339548 - 25339441
Alignment:
| Q |
28 |
caaattctgctacaaatgtgggaagaagcgatcatttacatctgcac---atacatgcaaatagcagttagtttattattccactgtttcagaggtaact |
124 |
Q |
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||||||||||||||| ||||||||||||||||||| | || | || ||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
25339548 |
caaattctgctacaattgtgggaagaagcgatcatatcaatttcgacgacatatatgcatatagcagttagtttattattcaactgtttcagaggtaact |
25339449 |
T |
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| Q |
125 |
catctttc |
132 |
Q |
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|||||||| |
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| T |
25339448 |
catctttc |
25339441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 25334124 - 25334007
Alignment:
| Q |
101 |
tattccactgtttcagaggtaactcatctttcatatataaataaattctatttaataagaaatgactagaaattaaatattttgaattttatgatgatct |
200 |
Q |
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||||||| ||||||| ||||||| |||||| ||| |||||||| ||| | ||| ||| | |||||||||||| || | |||||||||||||||||||| |
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| T |
25334124 |
tattccattgtttcaaaggtaacacatcttgcatttataaatatattatgcttattaacatatgactagaaat-aatttttttgaattttatgatgatca |
25334026 |
T |
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| Q |
201 |
gttttgtcgtttccattca |
219 |
Q |
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|||||| ||||||||||| |
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| T |
25334025 |
attttgttgtttccattca |
25334007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 25339353 - 25339303
Alignment:
| Q |
287 |
tctgtatcgatttgttatatgattgtcatgaatgatattgtggcaataaga |
337 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
25339353 |
tctgtatcgatttgtcatatgattgttatgaatgatattggggcaataaga |
25339303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 25339387 - 25339355
Alignment:
| Q |
228 |
actctatttcaattccttgtagtcatcaaaatt |
260 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
25339387 |
actctatttcaattccttgtagccatcaaaatt |
25339355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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