View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_10 (Length: 499)
Name: NF0594_low_10
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 493
Target Start/End: Original strand, 36639572 - 36640038
Alignment:
| Q |
30 |
atattgatgctcctcctatctttatttgacattccaaatcaaatcataa---taatataaaatcatatcatatcctttctactttttatagttctttatt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639572 |
atattgatgctcctcctatctttatttgacattccaaatcaaatcataataataatataaaatcatatcatatcctttctactttttatagttctttatt |
36639671 |
T |
|
| Q |
127 |
aacttttgatatcatattttttaagatagattttgcatatggcagcacctgcaaccaggtgattttcgacaacaaaatatataagacggctctgtcacat |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
36639672 |
aacttttgatatcatattttttaagatagattttgcatatggcagcacctgcaaccaggtaattttcgacaaccaaatatataagacggctctgtcacat |
36639771 |
T |
|
| Q |
227 |
agatacacagaggtagcagtgataacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcatcacccatcattct |
326 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36639772 |
agatacacagaggtagcagtgaaaacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcaacacccatcattct |
36639871 |
T |
|
| Q |
327 |
aatttctaatttttaattattaaatccttaaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaacctagctacg |
426 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639872 |
aatttctaatttttaattattaaatccttgaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaacctagctacg |
36639971 |
T |
|
| Q |
427 |
tatctccaatatttataatggcttctaagttcatcttttcttctgtctttttacttgttcttttctg |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639972 |
tatctccaatatttataatggcttctaagttcatcttttcttctgtctttttacttgttcttttctg |
36640038 |
T |
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