View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_15 (Length: 454)
Name: NF0594_low_15
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 46551398 - 46551721
Alignment:
| Q |
30 |
gtttgtacatggtagatctcttaagttggattttagggaaaggcgtgattagttgttatttgctgtaggatagttatgtatttggagtggcagttatctg |
129 |
Q |
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| T |
46551398 |
gtttgtacatggtagatctcttaagttggattttagggaaaggcgtgattagttgttatttgctgtaggatagttatgtatttggagtggcagttatctg |
46551497 |
T |
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| Q |
130 |
cgtggttatagacatatatacatatagaaattatggggggatgtcnnnnnnnnaccgtttgagcagtgtttgaaagagggaactccttgtataattctgg |
229 |
Q |
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| T |
46551498 |
tgtggttatagacatatatacatatagaaattatggggggatgtcttttttttaccgtttgagcagtgtttgaaagagggaactccttgtataattctgg |
46551597 |
T |
|
| Q |
230 |
tttatacttgaataattattagtagccatattttccagattttgtgttcaaaattttgagtttaatagtacatgccttgaactcaacagcattgacannn |
329 |
Q |
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| T |
46551598 |
tttatacttgaataattatcagtagccatattttccagattttgtgttcaaaa--ttgagtttaatagtacatgcctcgaactcaacagcattgacattt |
46551695 |
T |
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| Q |
330 |
nnnngtcaaaataaagcatagatatt |
355 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
46551696 |
ttttgtcaaaataaagcatagatatt |
46551721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 1027931 - 1028261
Alignment:
| Q |
30 |
gtttgtacatggtagatctcttaagttggattttagggaaaggcgtgattagttgttatttgctgtaggatagttatgtatttggagtggcagttatctg |
129 |
Q |
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| T |
1027931 |
gtttgtacatggtagatctcttaagttggattttagggaaaggcgtgattagttgttatttgctgtaggatagttatgtatttggagtggcagttatctg |
1028030 |
T |
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| Q |
130 |
cgtggttatagacatatataca-------tatagaaattatggggggatgtcnnnnnnnnaccgtttgagcagtgtttgaaagagggaactccttgtata |
222 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| |
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| T |
1028031 |
cgtggttatagatatatatacatatagtctatagaaattatgggggaatgtc-tttttttactgtttgtgcagtgtttgaaacagggaactccttgtata |
1028129 |
T |
|
| Q |
223 |
attctggtttatacttgaataattattagtagccatattttccagattttgtgttcaaaattttgagtttaatagtacatgccttgaactcaacagcatt |
322 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
1028130 |
attctgttttatacttgaataattattaggagccatattttccaaattttgtgttcaaacttttgagtttaatagtacatgccttcaactcaacagcatc |
1028229 |
T |
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| Q |
323 |
gacannnnnnngtcaaaataaagcatagatatt |
355 |
Q |
| |
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|| | |||||||||||||||||||||| |
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| T |
1028230 |
ga-atttttttgtcaaaataaagcatagatatt |
1028261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 18949609 - 18949691
Alignment:
| Q |
361 |
acaacccgatccaccttgagtgtacttgcaacccgatcaagaccaccatacaatgcattgctgtaacggatcatgtgtttcat |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18949609 |
acaacccgatccaccttgagtgtacttgcaacccgatcaagaccaccatacaatgcattgctgtagcggatcatgtgtttcat |
18949691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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