View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_17 (Length: 429)
Name: NF0594_low_17
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 47904843 - 47904666
Alignment:
| Q |
55 |
ttttttagactttattcaatttcagtccatcttagttttcatgtcctcatgaacagaggcaatatagtagtatatggttaatgttcacaataatcacttg |
154 |
Q |
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| T |
47904843 |
ttttttagactttattcaatttcagttcatcttagttttcatgtcctcatgaacagaggcaatatagtagtatatggttaatgtccacaataatcacttg |
47904744 |
T |
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| Q |
155 |
acctgcaatgtaaatgatgaccagctttaatgaatgcgagcaagctaactactctagtccacattcctcacttatcat |
232 |
Q |
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| T |
47904743 |
acctgcaatgtaaatgatgaccagctttaatgaatgcgagcaagctaactactctagtccacattcctcacttatcat |
47904666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 47904611 - 47904469
Alignment:
| Q |
287 |
atcaattccaattctttattgagaaaaggagacatgcaatataggtgtaattactaattagttttacttaaacgtttaagtagaatttagcattttgtaa |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
47904611 |
atcaattccaattctttattgagaaaaggagacatgcaatataggtgtaattactaattagttttacttaaacgtttaattagaatttagcattttgtga |
47904512 |
T |
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| Q |
387 |
ttattttcaaattgcatatacaaagtacatttacatgacagta |
429 |
Q |
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| T |
47904511 |
ttattttcaaattgcatatacaaagtacatttacatgacagta |
47904469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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