View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_18 (Length: 417)
Name: NF0594_low_18
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 30 - 408
Target Start/End: Original strand, 2600668 - 2601048
Alignment:
| Q |
30 |
caagatggcaaggccacaattgtgatcggtaccatgtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccgatttcaatgca |
129 |
Q |
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| T |
2600668 |
caagatggcaaggccacaattgtgattggtaccatgtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccaatttcaatgca |
2600767 |
T |
|
| Q |
130 |
aatttttgttgttctttttaaatttcgaataataagctagaaatttggacggtttgatattgtccaaacataccaaatgtttgagctatgaatactagaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
2600768 |
aatttttgttgttctttttaaatttcgaataataagctagaaatttggacggtttgatattgtccaaacataccaaatgtttgagcaatcaatactagaa |
2600867 |
T |
|
| Q |
230 |
aaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacac--atagagacggacttcatgtttttctg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
2600868 |
aaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtcttcaacacatatagagacggacttcatgtttatctg |
2600967 |
T |
|
| Q |
328 |
tctcttaacttttcgccgttgattcaaatttttcttagtattattaattgaatggaatgagataaagggttaaagtataat |
408 |
Q |
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| T |
2600968 |
tctcttaacttttcgtcgttgattcaaatttttctcagtattattaattgaatggaatgagataaagggttaaagtataat |
2601048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 408
Target Start/End: Original strand, 2573390 - 2573570
Alignment:
| Q |
228 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacatagagacggacttcatgtttttctg |
327 |
Q |
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| T |
2573390 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattactatgcaatt-atgatgtctctaacacatagagacggacttcatgtttttttg |
2573488 |
T |
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| Q |
328 |
tctcttaacttttcgccgttgattcaa-atttttcttagtattattaattgaatggaatgagataaagggttaaagtataat |
408 |
Q |
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| ||||||||||||| || |||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
2573489 |
tatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataat |
2573570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 2573106 - 2573214
Alignment:
| Q |
33 |
gatggcaaggccacaattgtgatcggtac---cat---gtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccgatttcaat |
126 |
Q |
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|||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||| |||||| |||||||||||||| || ||||||||| |
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| T |
2573106 |
gatggcaaggccacaattgtgatcggtatgtacattgggtttagattgtgtgcagtgtaactgcaagcaatatgtcacatcttaaccgtctgatttcaat |
2573205 |
T |
|
| Q |
127 |
gcaaatttt |
135 |
Q |
| |
|
||||||||| |
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|
| T |
2573206 |
gcaaatttt |
2573214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 2298888 - 2298846
Alignment:
| Q |
66 |
tttggattgtgtgcagtgtgactgcacgcaataggtcacatct |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2298888 |
tttggattgtgtgtagtgtgactgcacgcaatgagtcacatct |
2298846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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