View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_19 (Length: 392)

Name: NF0594_low_19
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_19
NF0594_low_19
[»] chr8 (1 HSPs)
chr8 (9-363)||(28598021-28598375)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 28598021 - 28598375
Alignment:
9 caacaatatccctattgccttcacatctgatccaacattacattcattattgcactcatgaagaccaaacagtttaatctttgcaacaagattgttgtct 108  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
28598021 caacaaaacccctattgccttcacatctgatccaacattacattcattattgcactcatgaagaccaaacagtttgatctttgcaacaagattgttgtct 28598120  T
109 aggaggatgttggatggagaaatatgacaatgagtaatgggcctgggctgaaatgagtttataaagcccagcccggaacaaacttctatggctatcctta 208  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
28598121 aggaggatgttggatggagaaacatgacaatgagttatgggcctgggctgaaatgagcttagaaagcccagcccagaacaaacttctatggctatcctta 28598220  T
209 tgcaatcttgccagcttatgaacttctttcttgtcttgcaaggtaggttttcttccaaactgccattgtgcatgtattccaatactaagcatttgggctc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28598221 tgcaatcttgccagcttatgaacttctttcttgtcttgcaaggtaggttttcttccaaactgccattgtgcatgtattccaatactaagcatttgggctc 28598320  T
309 agagcagaatccaagtatagcaaccagatgaggatgtcgaatactaccaagtgac 363  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
28598321 agagcagaatccaagtataccaaccagatgaggatgtcgaatactaccaagtgac 28598375  T

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