View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_20 (Length: 391)
Name: NF0594_low_20
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 18949544 - 18949691
Alignment:
| Q |
157 |
gcaccaacttatcaaaagtgtgccatgtcaacaagctatcagatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccg |
256 |
Q |
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| T |
18949544 |
gcaccaacttatcaaaagtgtgccatgtcaacaagctatcggatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccg |
18949643 |
T |
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| Q |
257 |
atcaagaccaccatacaatgcattgctgtaacggatcatgtgtttcat |
304 |
Q |
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| T |
18949644 |
atcaagaccaccatacaatgcattgctgtagcggatcatgtgtttcat |
18949691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 40871675 - 40871802
Alignment:
| Q |
177 |
tgccatgtcaacaagctatcagatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccgatcaagaccaccatacaatg |
276 |
Q |
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| T |
40871675 |
tgccatgtcaacaaactatctgatccagcttgatgcgactttccaacagctcgacacacattaagtgtactagcgactcgctcgagaccaccatacaaag |
40871774 |
T |
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| Q |
277 |
cattgctgtaacggatcatgtgtttcat |
304 |
Q |
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| T |
40871775 |
cgttgcagaacctcatcatgtgtttcat |
40871802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 54703738 - 54703838
Alignment:
| Q |
170 |
aaaagtgtgccatgtcaacaagctatcagatccagattgatgacactttccaacaacccgatccaccttgagtgtacttgcaacccgatcaagaccacca |
269 |
Q |
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| T |
54703738 |
aaaagtctgccatgttaataaactatcagatccagcttgatgtgactttccaatggcccgatccacgtcgagaatattagcaacccgttcaagaccacca |
54703837 |
T |
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| Q |
270 |
t |
270 |
Q |
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| T |
54703838 |
t |
54703838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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