View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_22 (Length: 389)
Name: NF0594_low_22
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 39 - 253
Target Start/End: Original strand, 47916642 - 47916860
Alignment:
| Q |
39 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
138 |
Q |
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| T |
47916642 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
47916741 |
T |
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| Q |
139 |
ttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatg---- |
234 |
Q |
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| T |
47916742 |
ttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaccccatttcgcgcgtgggacatgctcattcatggtttatgctgc |
47916841 |
T |
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| Q |
235 |
ctctacgtgccaaaaccca |
253 |
Q |
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| T |
47916842 |
ctctacgtgccaaaaccca |
47916860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 11782619 - 11782520
Alignment:
| Q |
39 |
tgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttgaaacaatgt |
138 |
Q |
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| T |
11782619 |
tgaagctttttgtgaagcttgttgatttcagagagaacatcttcctgatctttccttaaccgatccaattccttcgaattctccaaaattgaaacaatgt |
11782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 16348317 - 16348221
Alignment:
| Q |
157 |
caaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcattcatggtttatgctctacgtgccaaaaccca |
253 |
Q |
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| T |
16348317 |
caaccaagcagaacaattcatgatgcaaaatccacacaccccatttggcgcgtgggacatgctcattcatggtttatgctccacgcgcgaaaaccca |
16348221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 19581270 - 19581225
Alignment:
| Q |
344 |
ggatgcatgtttgttattgtggtgcttaatttttgttgaaccatca |
389 |
Q |
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| T |
19581270 |
ggatgcatgtttgttattgtggagcttaaattttgttgaaccatca |
19581225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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