View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_27 (Length: 356)

Name: NF0594_low_27
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_27
NF0594_low_27
[»] chr8 (2 HSPs)
chr8 (18-162)||(941786-941930)
chr8 (177-261)||(941678-941762)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 941786 - 941930
Alignment:
18 gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
941786 gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa 941885  T
118 ttgacatactagtcctttttcactaactctcgaattcttcgaacc 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
941886 ttgacatactagtcctttttcactaactctcgaattcttcgaacc 941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 941762 - 941678
Alignment:
177 ctcatccttcacaatattcatttggatgagttgaagatctcttagttgatgatacctctgaagtcacttcccctaggcttgttat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
941762 ctcatccttcacaatattcatttggatgagttgaagatctcttagttgatgatacctctgaagtcacttcccctaggcttgttat 941678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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