View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_31 (Length: 332)
Name: NF0594_low_31
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 7847361 - 7847678
Alignment:
| Q |
1 |
atgcaagtttaagttacaactgtgagcatttttatatatttgatttaatagacaggttaaattgacttctacgctctcaagacctggcttcttgctccat |
100 |
Q |
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| T |
7847361 |
atgcaagtttaagttacaactgtgagcatttttatatatttgatttaatagacaggttaaattgacttctacgctctcaagacctggcttcttgctccat |
7847460 |
T |
|
| Q |
101 |
atagcacgaaaagaacaggttctgctggaatgcttccatttaattaaagcctccaatgctataattaataaagctaaaacttgctatctatgtggctcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7847461 |
atagcacgaaaagaacaggttctgctggaatgcttccatttaattaaagcctccaatgctataattaataaagctaaaacttgctatctatgtggctcac |
7847560 |
T |
|
| Q |
201 |
aaaatgcatctccgcgatgttttaaaaagaatatgctttcatgggccacggataagttgatacgtttgatcaggcagggaggccgccttcagctgctagt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7847561 |
aaaatgcatctccgcaatgttttaaaaagaatatgctttcatgggccacggataagttgttacgtttgatcaggcagggaggccgccttcagctgctagt |
7847660 |
T |
|
| Q |
301 |
tttaaccgctgatgatgt |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
7847661 |
tttaaccgctgatgatgt |
7847678 |
T |
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