View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_37 (Length: 311)

Name: NF0594_low_37
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_37
NF0594_low_37
[»] chr1 (25 HSPs)
chr1 (46-311)||(9557271-9557537)
chr1 (38-141)||(9312962-9313065)
chr1 (38-141)||(27102538-27102641)
chr1 (62-141)||(7451883-7451962)
chr1 (49-136)||(4431042-4431129)
chr1 (38-141)||(11439642-11439745)
chr1 (38-136)||(27905787-27905885)
chr1 (89-141)||(32882770-32882822)
chr1 (38-141)||(376429-376531)
chr1 (38-141)||(49820512-49820615)
chr1 (51-141)||(10785083-10785173)
chr1 (38-131)||(17033950-17034042)
chr1 (38-107)||(34775228-34775297)
chr1 (47-107)||(41126107-41126167)
chr1 (86-141)||(30762011-30762066)
chr1 (38-105)||(37200498-37200565)
chr1 (38-141)||(46603717-46603819)
chr1 (69-134)||(10605082-10605147)
chr1 (59-132)||(46768554-46768627)
chr1 (47-146)||(18844898-18844996)
chr1 (30-141)||(26602447-26602556)
chr1 (38-141)||(38544338-38544441)
chr1 (85-139)||(34159046-34159100)
chr1 (86-119)||(52278684-52278717)
chr1 (79-131)||(15375599-15375650)
[»] chr6 (9 HSPs)
chr6 (30-141)||(3880234-3880345)
chr6 (38-139)||(17278086-17278187)
chr6 (38-131)||(20701430-20701522)
chr6 (47-133)||(6860398-6860484)
chr6 (38-136)||(13423718-13423816)
chr6 (30-134)||(16180486-16180589)
chr6 (50-130)||(15120235-15120315)
chr6 (47-131)||(32933979-32934062)
chr6 (93-141)||(20720286-20720334)
[»] chr5 (17 HSPs)
chr5 (38-141)||(26405170-26405273)
chr5 (38-134)||(25992357-25992453)
chr5 (38-141)||(7194923-7195026)
chr5 (38-141)||(8297827-8297929)
chr5 (47-141)||(8731303-8731396)
chr5 (56-141)||(33109824-33109909)
chr5 (38-130)||(26045596-26045688)
chr5 (38-134)||(30097689-30097785)
chr5 (47-131)||(10175044-10175128)
chr5 (38-133)||(13953876-13953973)
chr5 (38-136)||(23426656-23426754)
chr5 (38-126)||(27713429-27713516)
chr5 (65-131)||(7391629-7391695)
chr5 (39-141)||(17853101-17853203)
chr5 (59-109)||(21391932-21391982)
chr5 (59-127)||(5187319-5187387)
chr5 (38-106)||(24071918-24071986)
[»] chr4 (17 HSPs)
chr4 (38-141)||(35947929-35948032)
chr4 (40-131)||(42719514-42719605)
chr4 (47-136)||(9262808-9262897)
chr4 (38-133)||(19814847-19814943)
chr4 (38-136)||(41117595-41117693)
chr4 (38-136)||(52009181-52009279)
chr4 (30-141)||(16832641-16832753)
chr4 (62-141)||(2061454-2061533)
chr4 (40-141)||(20632119-20632221)
chr4 (64-141)||(12296556-12296632)
chr4 (79-134)||(21983504-21983558)
chr4 (38-141)||(49747884-49747987)
chr4 (62-136)||(38636861-38636935)
chr4 (38-141)||(48098662-48098766)
chr4 (40-111)||(22810825-22810895)
chr4 (38-134)||(28967231-28967326)
chr4 (38-110)||(46487636-46487707)
[»] chr7 (20 HSPs)
chr7 (38-136)||(6726046-6726144)
chr7 (61-130)||(33719344-33719413)
chr7 (38-130)||(42532892-42532984)
chr7 (32-141)||(43235660-43235769)
chr7 (38-141)||(8745485-8745588)
chr7 (39-136)||(1321151-1321246)
chr7 (38-134)||(28534134-28534229)
chr7 (47-141)||(24324420-24324514)
chr7 (38-136)||(44755923-44756021)
chr7 (38-131)||(47456706-47456798)
chr7 (38-130)||(48058306-48058397)
chr7 (79-134)||(3478745-3478800)
chr7 (38-113)||(26385810-26385882)
chr7 (40-133)||(36674828-36674921)
chr7 (84-141)||(40292632-40292688)
chr7 (38-141)||(6716358-6716461)
chr7 (38-145)||(13312193-13312300)
chr7 (38-100)||(16828763-16828825)
chr7 (64-141)||(9427701-9427777)
chr7 (79-131)||(25438756-25438807)
[»] chr3 (15 HSPs)
chr3 (38-131)||(4171100-4171193)
chr3 (38-130)||(48892986-48893078)
chr3 (38-136)||(50518716-50518814)
chr3 (38-136)||(14893286-14893384)
chr3 (38-133)||(823027-823122)
chr3 (38-136)||(33143579-33143677)
chr3 (54-139)||(37123742-37123827)
chr3 (40-136)||(32010145-32010241)
chr3 (38-136)||(46358009-46358107)
chr3 (38-134)||(25648039-25648135)
chr3 (38-136)||(14280176-14280274)
chr3 (38-129)||(25594142-25594233)
chr3 (47-141)||(27399353-27399448)
chr3 (65-134)||(28937357-28937426)
chr3 (65-141)||(45354530-45354606)
[»] scaffold0050 (1 HSPs)
scaffold0050 (38-136)||(37063-37161)
[»] chr2 (28 HSPs)
chr2 (30-141)||(34230549-34230659)
chr2 (38-136)||(7696317-7696415)
chr2 (47-141)||(25504511-25504604)
chr2 (60-128)||(10772903-10772971)
chr2 (38-141)||(29139574-29139675)
chr2 (38-141)||(29997301-29997404)
chr2 (38-141)||(33788248-33788350)
chr2 (38-127)||(13337606-13337695)
chr2 (47-136)||(42802451-42802540)
chr2 (40-136)||(33533371-33533467)
chr2 (38-141)||(4472299-4472402)
chr2 (38-136)||(41086431-41086529)
chr2 (47-141)||(44594043-44594136)
chr2 (38-131)||(22884746-22884839)
chr2 (38-141)||(4975101-4975204)
chr2 (38-141)||(4993009-4993112)
chr2 (54-141)||(12343177-12343264)
chr2 (66-141)||(29487484-29487558)
chr2 (38-136)||(10173206-10173304)
chr2 (47-137)||(20572437-20572527)
chr2 (59-141)||(37559833-37559915)
chr2 (38-100)||(41113403-41113465)
chr2 (38-127)||(15817011-15817099)
chr2 (38-130)||(27740344-27740435)
chr2 (38-136)||(37770280-37770375)
chr2 (87-141)||(3411722-3411774)
chr2 (84-141)||(30965917-30965974)
chr2 (38-70)||(40360652-40360684)
[»] chr8 (8 HSPs)
chr8 (38-141)||(12197697-12197800)
chr8 (38-141)||(12442125-12442228)
chr8 (38-141)||(25184744-25184846)
chr8 (38-136)||(17656363-17656461)
chr8 (81-130)||(5214941-5214989)
chr8 (38-136)||(8862251-8862346)
chr8 (70-141)||(43312277-43312348)
chr8 (42-134)||(8843743-8843833)
[»] scaffold1613 (1 HSPs)
scaffold1613 (38-141)||(617-720)
[»] scaffold1384 (1 HSPs)
scaffold1384 (90-141)||(1281-1332)
[»] scaffold0063 (1 HSPs)
scaffold0063 (47-114)||(58493-58560)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 46 - 311
Target Start/End: Original strand, 9557271 - 9557537
Alignment:
Q  46 ttatatacgacgtcttttgtttgtattctcagattcatcggtctctgtt-cgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaagaa 144  Q
    |||||||||| || |||| |||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||| |||||||| |||||||||  |    
T  9557271 ttatatacgatgttttttatttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctggttgtttaacaaaatttgttgttaaaaaaga 9557370  T
Q  145 actattaaaccccattagatttagaaattagaaatacaagacatttggcatttcaaatctattatatacatattttcatgaaatcatggttcctnnnnnn 244  Q
    |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  9557371 aaaattaaacccctttagatttagaaattagaaatacaagacatttggcatttcaaatctattatatacatattttcatgaaatcatggttcctaaaact 9557470  T
Q  245 nnnnnnnnnnnnnnnnntatattacctgcaaacacgactgaaacaatgcacacaattgcaaatatga 311  Q
                     ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9557471 caaaaataaaaataaaatatattacccgcaaacacgactgaaacaatgcacacaattgcaaatatga 9557537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 9313065 - 9312962
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||||||||||| |||||| ||||||| | || |||| ||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||     
T  9313065 tgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagagatctcgttgtttaataaaatttgttgttt 9312966  T
Q  138 aaaa 141  Q
    ||||    
T  9312965 aaaa 9312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 27102538 - 27102641
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||||||| |  ||||||||||||||||||| |||| | |||| |||||||||| | ||| |||||||||||||||||||||||||||||     
T  27102538 tgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatctggttgtttaataaaatttgctgttt 27102637  T
Q  138 aaaa 141  Q
    ||||    
T  27102638 aaaa 27102641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 7451962 - 7451883
Alignment:
Q  62 ttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||| |||||||||| ||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctgtttaaaa 7451883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 4431042 - 4431129
Alignment:
Q  49 tatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||| || ||||||||||||||||||  |||| |||||||| |||||||| ||||| ||| || ||||||||||||||||||||||    
T  4431042 tatacggcgccttttgtttgtattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctgtt 4431129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 11439745 - 11439642
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||  |||||| | || ||||||||||||||||||  |||| || ||| |||||||||| ||||| |||||||||||||||||||||||| ||||     
T  11439745 tgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgtttaataaaatttgttgttt 11439646  T
Q  138 aaaa 141  Q
    ||||    
T  11439645 aaaa 11439642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 27905787 - 27905885
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||| | ||||||||||| || | ||||||| |||| |||||| |||||||| ||| |||| ||||||||||||||||||||||||| |||| ||||    
T  27905787 tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttgttgtt 27905885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 32882770 - 32882822
Alignment:
Q  89 tctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  32882770 tctgttcgtcttgagcagggatgtgattgtttaataaaatttgctgttaaaaa 32882822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 376531 - 376429
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||| || |||||||| || ||||  ||||||||||| | |||||| ||||||||||||||| ||||||||  ||| || ||||||||||||||||||     
T  376531 tgttctgcctatatacggcgcctttactttgtattctctgtttcatccgtctctgttcgtcttgagcagggacgtgg-tggttaataaaatttgctgttt 376433  T
Q  138 aaaa 141  Q
    ||||    
T  376432 aaaa 376429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 49820512 - 49820615
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| || ||| ||||||||| |||||||||||| |||||| || ||||| |  ||||| ||||| |||| | ||||| ||||||||||||||| |    
T  49820512 tgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttgctgtaa 49820611  T
Q  138 aaaa 141  Q
    ||||    
T  49820612 aaaa 49820615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 10785173 - 10785083
Alignment:
Q  51 tacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||| ||| ||| |||||||||||||| || | | |||||| |||||||| |||||||||||||||||| ||| ||||||| |||| ||||    
T  10785173 tacggcgtttttagtttgtattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttgatgtttaaaa 10785083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 17033950 - 17034042
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||||||||||||||| |||||||||||||| || || ||| |||||| ||||| |||| ||||  ||| ||||| |||| |||||||||    
T  17033950 tgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtctatgttcatcttgagcatagatttggtt-tttactaaaatttg 17034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 34775228 - 34775297
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagg 107  Q
    |||||||| |||||||| || |||| |||||||||||||| || |||||||| |||||||||| ||||||    
T  34775228 tgttccgcctatatacggcgcctttagtttgtattctcagctttatcggtctttgttcgtcttgagcagg 34775297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 41126167 - 41126107
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagg 107  Q
    ||||||||| | |||| |||||||||||| || ||||||||||||||||||||| ||||||    
T  41126167 tatatacgatgcctttagtttgtattctctgaatcatcggtctctgttcgtcttgagcagg 41126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 30762066 - 30762011
Alignment:
Q  86 gtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||||||||| |||| ||||||| || || |||||||||||||||||||||    
T  30762066 gtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctgttaaaaa 30762011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 37200498 - 37200565
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagca 105  Q
    |||||||| ||||||||| |||||| |||||||||||| |  ||| ||||||||||||||||| ||||    
T  37200498 tgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagca 37200565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 46603717 - 46603819
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||||||| |||||||||||||||||| || ||  || |||||| | |||||||| || ||||||||  || ||||||||||||||  ||||    
T  46603717 tgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtctttattcgtcttgagtagggatctcatt-tttaataaaatttgtagtta 46603815  T
Q  138 aaaa 141  Q
    ||||    
T  46603816 aaaa 46603819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 10605082 - 10605147
Alignment:
Q  69 tattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    ||||||| | |||| | |||||| |||||||| |||||||||||| ||||| ||||||||||||||    
T  10605082 tattctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgctg 10605147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 46768554 - 46768627
Alignment:
Q  59 cttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgc 132  Q
    ||||||||||||| ||||  |||| |  |||||||||||||| |||| | || |||||||||||||||||||||    
T  46768554 cttttgtttgtatgctcaatttcaccaatctctgttcgtcttgagcaagaatttggttgtttaataaaatttgc 46768627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 18844996 - 18844898
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaagaaac 146  Q
    |||| |||||| |||||||||||||| ||  | | ||| |||| ||||||| || || ||||||| |||| |||||||||||||| ||||||||| ||||    
T  18844996 tatacacgacgccttttgtttgtattatctcaattatcagtctatgttcgttttgagtagggatccggtt-tttaataaaatttgttgttaaaaaaaaac 18844898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 26602556 - 26602447
Alignment:
Q  30 ttttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatt 129  Q
    ||||||| |||||||  ||||||| ||   |||||||||| ||||| || ||| ||||||||||| ||||| |||| ||||| |||| ||||||||||||    
T  26602556 ttttttggtgttccgtctatatacaacactttttgtttgttttctccgaatcaccggtctctgttggtcttgagca-ggatcgggtt-tttaataaaatt 26602459  T
Q  130 tgctgttaaaaa 141  Q
    || |||| ||||    
T  26602458 tgttgtttaaaa 26602447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 38544441 - 38544338
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||| | |||||||||||||||| |||||||||||| || |||  | ||| |||||||||| |||  |||||  ||| || ||||||| ||| |||||    
T  38544441 tgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtcttgagctcggatcgagtttttaaataaaagttgatgtta 38544342  T
Q  138 aaaa 141  Q
    ||||    
T  38544341 aaaa 38544338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 34159046 - 34159100
Alignment:
Q  85 ggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaa 139  Q
    ||||||| || ||||| |||||||||||| |||||||||||| |||| |||||||    
T  34159046 ggtctctatttgtcttgagcagggatctgattgtttaataaattttgttgttaaa 34159100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 52278684 - 52278717
Alignment:
Q  86 gtctctgttcgtcttaagcagggatctggttgtt 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  52278684 gtctctgttcgtcttgagcagggatctggttgtt 52278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 15375599 - 15375650
Alignment:
Q  79 ttcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||||||| |||||||||||| | ||||| ||||||| ||||||||||||||    
T  15375599 ttcatcggtttctgttcgtcttgaacagggttctggtt-tttaataaaatttg 15375650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 3880345 - 3880234
Alignment:
Q  30 ttttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatt 129  Q
    ||||||| |||||||||||||||||    |||||||||||||| |||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||    
T  3880345 ttttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatt 3880246  T
Q  130 tgctgttaaaaa 141  Q
    || |||||||||    
T  3880245 tgttgttaaaaa 3880234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 17278187 - 17278086
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||||||||||| |||| | |||||||||| || ||| |||||||||||| |||||||||| ||||||||| || |||||||||||| ||||    
T  17278187 tgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctgttcatcttaagcagcgatctggtttttaaataaaatttgccgtta 17278088  T
Q  138 aa 139  Q
    ||    
T  17278087 aa 17278086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 20701522 - 20701430
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||| |||||||  || ||||||||||||||||||| |||| || |||||||||||||| || |||||| ||||||||||||||||||||    
T  20701522 tgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaataaaatttg 20701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 6860398 - 6860484
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgct 133  Q
    |||||||| ||||||||||||||||||| || |||| || ||| | ||| |||| ||||||||||| ||||||||||||||| ||||    
T  6860398 tatatacggcgtcttttgtttgtattcttagtttcaccgatctatattcatcttgagcagggatctagttgtttaataaaatatgct 6860484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 13423718 - 13423816
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| ||||||||||| |||| | |||||||||||| ||||  |||||||||||||||| || ||||| ||  | ||| ||||||||||||||||    
T  13423718 tgttccgcctatatacgacgcctttagattgtattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgctgtt 13423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 16180589 - 16180486
Alignment:
Q  30 ttttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatt 129  Q
    ||||||| |||||||||||||||||  ||||||  |||||||| || | |||| || ||| |||||||||| ||||| |||||| || ||||||||||||    
T  16180589 ttttttggtgttccgcttatatacggtgtctttcatttgtattatctgtttcaccgatctttgttcgtcttgagcagagatctgatt-tttaataaaatt 16180491  T
Q  130 tgctg 134  Q
    |||||    
T  16180490 tgctg 16180486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 15120315 - 15120235
Alignment:
Q  50 atacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    ||||| ||||||| |||||||||||||| || | ||||||||||| | ||| | |||||||| ||||||| ||||||||||    
T  15120315 atacgtcgtctttagtttgtattctcagttttaccggtctctgtttgacttgaccagggatccggttgttaaataaaattt 15120235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 32934062 - 32933979
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||||||||||| ||||||||| ||  || || | |||||||||| |||| |||||| ||||||||||| |||||||||||    
T  32934062 tatatacgacgtctttagtttgtattatctaat-caccagtctctgttcatcttgagcaggaatctggttgttaaataaaatttg 32933979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 20720286 - 20720334
Alignment:
Q  93 ttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||  ||||||||| | || ||||||||||||||||||||||||    
T  20720286 ttcgtcttgtgcagggatcagattttttaataaaatttgctgttaaaaa 20720334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 26405273 - 26405170
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||  ||||||||||| ||||||||||||||||||| |||| |||||| |||||||||| |||||  ||||||||||||||||||||||| |||||    
T  26405273 tgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtctttgttcgtcttgagcagaaatctggttgtttaataaaatttgttgtta 26405174  T
Q  138 aaaa 141  Q
    ||||    
T  26405173 aaaa 26405170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 25992357 - 25992453
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||| |||||||| || |||||||||||||| |||  |||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  25992357 tgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctg 25992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 7195026 - 7194923
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||| |||||   |||||| | ||||||||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||     
T  7195026 tgttccgcatataaacgactcattttgtctatattctcagtttcatcgatctttgttcgtcttgagtagggatctggttgtttaataaaatttgctgttt 7194927  T
Q  138 aaaa 141  Q
    ||||    
T  7194926 aaaa 7194923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 8297827 - 8297929
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||| ||| ||| ||||| ||||||||||||| |||| ||||||||||||||||| || || |||||| ||||| |||||||||||||||||    
T  8297827 tgttccgcctatgtacaacgcctttt-tttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctgtta 8297925  T
Q  138 aaaa 141  Q
    ||||    
T  8297926 aaaa 8297929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 8731303 - 8731396
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||| || ||||||||||||||||| || ||| |||| |||||| ||||| |||||||||||| || ||||||||||||||||||| ||||    
T  8731303 tatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgatt-tttaataaaatttgctgttcaaaa 8731396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 33109909 - 33109824
Alignment:
Q  56 cgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||||||||||||| |||| |  | | |||||||||||||||| ||| || ||||||||||| |||||||||||||||    
T  33109909 cgtcttttgtttgtattctcagtttcaccaatttatgttcgtcttaagcagagatttgattgtttaataatatttgctgttaaaaa 33109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 26045688 - 26045596
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    |||||||  |||||||| || ||||||||||||| ||||  |||| |||||||||||||| || ||||  ||||| |||||||||||||||||    
T  26045688 tgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagttgtttaataaaattt 26045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 30097689 - 30097785
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||| |||||||| ||||||| |||||||||||   ||| | |||||| ||||||||||||||||  |||| ||||||||| |||| ||||||    
T  30097689 tgttccgcctatatacggcgtctttagtttgtattctttaatttaccggtctttgttcgtcttaagcagaaatctagttgtttaaaaaaaattgctg 30097785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 10175044 - 10175128
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||||||| | |||||||||||||||| |  |||| |||||||||||| | || || | ||||||||||| |||||||||||||    
T  10175044 tatatacgatgccttttgtttgtattcttaatttcaccggtctctgttcattttgagtaaggatctggttgattaataaaatttg 10175128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 13953973 - 13953876
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcat--cggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgct 133  Q
    |||||||| |||||||| || |||| ||||||| |||||| ||||   ||||||||||||||||| ||||| || ||||  ||| |||||||||||||    
T  13953973 tgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcagagacctggaggttaaataaaatttgct 13953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 23426656 - 23426754
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||| |  |||||  |||||||||| || ||| |||||||||||| |||| |||||  ||||| || || ||||||||||||||||    
T  23426656 tgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaatttgctgtt 23426754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 27713429 - 27713516
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaa 126  Q
    |||||||| |||||| | || |||| |||||||| ||||| ||||  |||||| ||||||||| | ||||||||||||| |||||||||    
T  27713429 tgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctggtt-tttaataaa 27713516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 7391695 - 7391629
Alignment:
Q  65 tttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||||||||||  |||| ||||||||||||||||| | ||| |||||| |  ||||||||||||||    
T  7391695 tttgtattctcattttcaccggtctctgttcgtcttgaacagagatctgatgatttaataaaatttg 7391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 17853203 - 17853101
Alignment:
Q  39 gttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaa 138  Q
    |||||||  ||||||| ||  ||| ||||||||| || || ||| |||| | | ||| |||| ||||||||||||||| || ||||||||||| ||||||    
T  17853203 gttccgcacatatacggcgcatttagtttgtattttctgaatcaccggtttatattcatcttgagcagggatctggtttttaaataaaatttgttgttaa 17853104  T
Q  139 aaa 141  Q
    |||    
T  17853103 aaa 17853101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 21391982 - 21391932
Alignment:
Q  59 cttttgtttgtattctcagattcatcggtctctgttcgtcttaagcaggga 109  Q
    |||| |||||||||||||| |||| |||||| |||||||||| ||||||||    
T  21391982 ctttagtttgtattctcagtttcaccggtctttgttcgtcttgagcaggga 21391932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 5187319 - 5187387
Alignment:
Q  59 cttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaa 127  Q
    ||||||||||||||||||  |||| || |||||| || |||| ||||| ||| | ||||||||||||||    
T  5187319 cttttgtttgtattctcaatttcaccgatctctgctcttcttgagcagagatttagttgtttaataaaa 5187387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 24071986 - 24071918
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcag 106  Q
    |||||||| |||||||| || | || ||||||||| || || |||||||||| |||| |||||||||||    
T  24071986 tgttccgcctatatacggcgcccttagtttgtattatctgaatcatcggtctttgtttgtcttaagcag 24071918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 35948032 - 35947929
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||||||||||||| | |||||||||||||||||||||||||||   || | ||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  35948032 tgttccgcttatatatggcgtcttttgtttgtattctcagattcactagtatatgttcgtcttaagcaaggatctggttgtttaataatatttgatgtta 35947933  T
Q  138 aaaa 141  Q
    ||||    
T  35947932 aaaa 35947929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 42719514 - 42719605
Alignment:
Q  40 ttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||| ||||||||| || |||||||||||||||||    
T  42719514 ttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 9262808 - 9262897
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| || ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  9262808 tatatacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgctgtt 9262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 19814943 - 19814847
Alignment:
Q  38 tgttccgcttatatacgacgtctttt-gtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgct 133  Q
    ||||| |||||||||| ||| ||||| ||||||| |||| | || ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19814943 tgttctgcttatatacaacgccttttagtttgtactctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 41117693 - 41117595
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| ||||||||| | || ||||||||| |||||  |||| | ||||||||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  41117693 tgttccgcctatatacgatgcctcttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcagagatctagttgtttaataaaatttgttgtt 41117595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 52009181 - 52009279
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||| || ||| |||||| || ||||| |||| || ||||| ||||||||  ||||||||||||| ||||||||||||||||||||    
T  52009181 tgttccgcctatatacggcgccttatgtttgcatgctcagtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctgtt 52009279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 16832753 - 16832641
Alignment:
Q  30 ttttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttg-tttaataaaat 128  Q
    ||||||| |||||||| ||||| |  || ||||||||||||||||||| |||| || | |||||| ||||| || |||| |||||||| |||||||||||    
T  16832753 ttttttggtgttccgcctatatgcagcgccttttgtttgtattctcagtttcaccgatttctgtttgtcttgagaaggggtctggttgttttaataaaat 16832654  T
Q  129 ttgctgttaaaaa 141  Q
    ||| |||||||||    
T  16832653 ttgttgttaaaaa 16832641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 2061533 - 2061454
Alignment:
Q  62 ttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||||||| |||||| || ||||||||||||  |||||||||||  |||||||||||||||| ||| |||||    
T  2061533 ttgtttgtattctcagtttcatcagtttctgttcgtcttgggcagggatctgactgtttaataaaatttgttgtaaaaaa 2061454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 20632221 - 20632119
Alignment:
Q  40 ttccgcttatatacgacgtctttt-gtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaa 138  Q
    |||||| ||||||| ||| ||||| |||||||||||| || ||| ||||||| |||||||||||||||| ||||| || || |||||||||||| ||| |    
T  20632221 ttccgcctatatacaacgccttttagtttgtattctctgaatcaccggtctcagttcgtcttaagcaggaatctgttttttaaataaaatttgccgttta 20632122  T
Q  139 aaa 141  Q
    |||    
T  20632121 aaa 20632119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 12296556 - 12296632
Alignment:
Q  64 gtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||| || |||||||||||| ||||| || ||||| ||||||||| || |||||||||||||||||||||    
T  12296556 gtttgtattctctgaatcatcggtctctattcgttttgagcagagatctggtt-ttaaataaaatttgctgttaaaaa 12296632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 21983558 - 21983504
Alignment:
Q  79 ttcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||||||    
T  21983558 ttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctg 21983504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 49747884 - 49747987
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||||||||| ||||||||||||||| || |  |||| | |||||| |||||||| |||  | || |||||||||||||||||||| ||||     
T  49747884 tgttccgcatatatacgatgtcttttgtttgtatgctaaatttcaccagtctctattcgtcttgagcgagaatatggttgtttaataaaatttgatgttt 49747983  T
Q  138 aaaa 141  Q
    ||||    
T  49747984 aaaa 49747987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 38636935 - 38636861
Alignment:
Q  62 ttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    ||||||||| |||||  |||| ||||||||||||||| | | | |||| ||||||||||||||||||||||||||    
T  38636935 ttgtttgtagtctcattttcaccggtctctgttcgtcctgaacggggacctggttgtttaataaaatttgctgtt 38636861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 48098662 - 48098766
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttg-tttaataaaatttgctgtt 136  Q
    |||||||| |||||||  ||||||||||||||||| |||| |||| || |||| ||||||||| |||||| ||||  ||| |||||||| ||||| | ||    
T  48098662 tgttccgcctatatactgcgtcttttgtttgtattttcagtttcaccgatctccgttcgtcttgagcaggaatctaattgttttaataacatttgatatt 48098761  T
Q  137 aaaaa 141  Q
    |||||    
T  48098762 aaaaa 48098766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 22810895 - 22810825
Alignment:
Q  40 ttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatc 111  Q
    ||||||||||||||| || |||| |||||||||||||  |||| | ||||||||||||||| ||||||||||    
T  22810895 ttccgcttatatacggcgccttt-gtttgtattctcaatttcaccagtctctgttcgtcttgagcagggatc 22810825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 28967231 - 28967326
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||| |||||||  || |||| ||||||||| || | |||| || |||||||||||||| |||||  |||||||| || ||||||||||||||    
T  28967231 tgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttgctg 28967326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 46487636 - 46487707
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggat 110  Q
    |||||||| ||||||||| | |||| ||||||||||||  | ||| ||||||||||||| |||||| ||||||    
T  46487636 tgttccgcctatatacgatgcctttagtttgtattctctaaatcaccggtctctgttcg-cttaagtagggat 46487707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 6726144 - 6726046
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  6726144 tgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 6726046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 33719344 - 33719413
Alignment:
Q  61 tttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  33719344 tttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 42532984 - 42532892
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    |||||||| |||||||| || |||||| |||||||||||| | || ||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  42532984 tgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 43235660 - 43235769
Alignment:
Q  32 ttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||| ||||||| | |||||||| ||||||| |||||||| |||| ||||||| | | |||||||||| || ||| |||||||| ||||||||||||||    
T  43235660 ttttggtgttccgttcatatacgatgtcttttatttgtattttcagtttcatcgatttatgttcgtcttgagtaggaatctggttctttaataaaatttg 43235759  T
Q  132 ctgttaaaaa 141  Q
     |||||||||    
T  43235760 ttgttaaaaa 43235769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 8745485 - 8745588
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||||||| ||||| |||||| |||| |||| |||| | ||||||||||||||| |  |||||| || ||||||||||| ||||| |||||    
T  8745485 tgttccgcctatatacggcgtctcttgtttctattttcagtttcaccagtctctgttcgtcttgaatagggatttgattgtttaataatatttgatgtta 8745584  T
Q  138 aaaa 141  Q
    ||||    
T  8745585 aaaa 8745588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 1321151 - 1321246
Alignment:
Q  39 gttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    ||||||| |||||||| |||| |  |||||||||||||| ||||||| |||| ||||||||| || || ||| |||||||||||||||||||| ||||    
T  1321151 gttccgcctatatacggcgtcgt--gtttgtattctcagtttcatcgatctccgttcgtcttgagtagagatgtggttgtttaataaaatttgttgtt 1321246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 28534229 - 28534134
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||| |||||||| || ||||| |||||||||||  | ||| ||||||||||||||||| ||||  ||| ||||| |||||||||||||||||    
T  28534229 tgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggtt-tttaataaaatttgctg 28534134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 24324514 - 24324420
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||| ||||| |||||||||||||||||  ||||||| ||||| |||||||| ||||   || |  ||||||||||||||||| |||||||||    
T  24324514 tatatatgacgttttttgtttgtattctcactttcatcgatctctattcgtcttgagcaaatatataattgtttaataaaatttgttgttaaaaa 24324420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 44755923 - 44756021
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||| ||| ||||||| ||| ||||||||||||| || || ||||  | |||  ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  44755923 tgtttcgcctatatacaacgccttttgtttgtatgcttagtttcactgatcttcgttcgtcttgagcagggatctagttgtttaataaaatttgttgtt 44756021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 47456798 - 47456706
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||| |||||||  || ||||  |||||||| || | |||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  47456798 tgttccgcctatatactgcgcctttcatttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttg 47456706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 48058397 - 48058306
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    |||||||| |||||| |||| |||| ||||||||||||   |||| ||||||||||| ||||| ||||| ||| ||||| |||||||||||||    
T  48058397 tgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtt-tttaataaaattt 48058306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 3478745 - 3478800
Alignment:
Q  79 ttcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||| ||||||||||| ||||| | |||||||||||||||| ||||||||||||||    
T  3478745 ttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctg 3478800  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26385882 - 26385810
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctg 113  Q
    |||||||| |||||||| ||||||||   |||| | || || ||||||||||||||||||||| ||||||||||||    
T  26385882 tgttccgcctatatacggcgtctttt---tgtagtttctgaatcatcggtctctgttcgtcttgagcagggatctg 26385810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 36674828 - 36674921
Alignment:
Q  40 ttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgct 133  Q
    |||||| ||||||||||| |||||||||||||   ||  |||| || |||||||||||||| ||  || |||| |||||||||||| |||||||    
T  36674828 ttccgcctatatacgacgccttttgtttgtatctccaatttcaccgatctctgttcgtcttgagtcggaatctagttgtttaataatatttgct 36674921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 40292688 - 40292632
Alignment:
Q  84 cggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||| |||||||||    
T  40292688 cggtctctgttcgtcttgaggagggatctgatt-tttaataaaatttgttgttaaaaa 40292632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 6716461 - 6716358
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||||| ||||||||| |  ||||  ||||||||||| | |||||| ||||| ||| ||||| ||||||||  |||| ||| ||||||||||| ||||     
T  6716461 tgttccggttatatacggcccctttaatttgtattctctgtttcatctgtctcggtttgtcttgagcagggacttggtggttaaataaaatttgatgttt 6716362  T
Q  138 aaaa 141  Q
    ||||    
T  6716361 aaaa 6716358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 13312193 - 13312300
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| ||||||| | | |||| ||||||||| || || |||| | |||| ||||||||||||| | ||||  ||| || ||||||||||||||||     
T  13312193 tgttccgcctatatacaaagcctttagtttgtattatctgaatcattgatctcagttcgtcttaagctgagatcgagttattaaataaaatttgctgttt 13312292  T
Q  138 aaaagaaa 145  Q
     |||||||    
T  13312293 caaagaaa 13312300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 16828825 - 16828763
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtctt 100  Q
    |||||||| |||||||| ||  |||||||||||||||||| |||| |||||| |||| |||||    
T  16828825 tgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtctttgtttgtctt 16828763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 9427777 - 9427701
Alignment:
Q  64 gtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||||||  | ||| || |||||||||||||| |||| |||||||||| |||||  ||||||| |||||||||    
T  9427777 gtttgtattctctaaatcaccgatctctgttcgtcttgagcaaggatctggtt-tttaaataaatttgttgttaaaaa 9427701  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 25438756 - 25438807
Alignment:
Q  79 ttcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    ||||||||| |||||||||||| || | |||||||||| ||||||||||||||    
T  25438756 ttcatcggtatctgttcgtcttgagtatggatctggtt-tttaataaaatttg 25438807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 4171100 - 4171193
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||| | ||||||||||| ||||||    
T  4171100 tgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagttgtttaatagaatttg 4171193  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 48893078 - 48892986
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    |||||| |||||||||| | || ||||||||||||||||| |||||| |||| |||||||||| ||||||||||| |||||||||||||||||    
T  48893078 tgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctgtctttgttcgtcttgagcagggatctagttgtttaataaaattt 48892986  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 50518814 - 50518716
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| ||||||||||  ||||||||||||||||||| |||| | ||||||||||||||| ||||||||||   ||||||||||||||||| ||||    
T  50518814 tgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttgatgtt 50518716  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 14893286 - 14893384
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||| ||||||||||||||| |||| | |||| | |||||||||| |||| |||||  ||||||||||||||||||||||| ||||    
T  14893286 tgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatctggttgtttaataaaatttgttgtt 14893384  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 823122 - 823027
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgct 133  Q
    |||||| ||||||||||||| ||||   ||||| |||| || ||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  823122 tgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctgttcgtcttgagcagcgatctggttttttaataaaatttgct 823027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 33143677 - 33143579
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||| |||| |||||| |||||||||||| |||| || | | |||||| ||| ||||| |||||||||||||||||||||||| ||||    
T  33143677 tgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgccttgagcagagatctggttgtttaataaaatttgttgtt 33143579  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 37123742 - 37123827
Alignment:
Q  54 gacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaa 139  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||||| ||||| ||| |  ||||||||||||||||  |||||||    
T  37123742 gacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcagagatttaattgtttaataaaatttcttgttaaa 37123827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 32010145 - 32010241
Alignment:
Q  40 ttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||| |||||||||||  ||| | |||||||||| || ||| || |||||||||||||| || ||||||||||||||| ||||||||||| ||||    
T  32010145 ttccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttgttgtt 32010241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 46358107 - 46358009
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||| ||| |||||||  ||||||| ||||||||| || || ||   |||||||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  46358107 tgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgttgtt 46358009  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 25648039 - 25648135
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||||||  |||||||  || |||||||||||||||| || |||| || |||||||||||||| | |||||||  ||||||||||| ||||||||||    
T  25648039 tgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggattaggttgtttaattaaatttgctg 25648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 14280274 - 14280176
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||| || ||||  |||||||| |||| ||||||| ||| |||||||||| ||||  |||||| ||||||||||| |||| |||||    
T  14280274 tgttccgcctatatacggcgcctttaatttgtattatcagtttcatcgatctttgttcgtcttgagcaaagatctgattgtttaataatatttactgtt 14280176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 25594233 - 25594142
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatt 129  Q
    |||||||| |||||||||||  |||| ||| ||||||| || ||| || |||||||| ||||| ||||| ||||||||| || |||||||||    
T  25594233 tgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctgtttgtcttgagcagtgatctggtttttaaataaaatt 25594142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 27399353 - 27399448
Alignment:
Q  47 tatatacgacgtcttttg-tttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||| |||||||||  |||||||| || || |||| | |||||||| ||||| ||||||||||||| | || |||||||||| ||||||||||    
T  27399353 tatatacaacgtcttttaatttgtattttctgaatcatggttctctgtttgtcttgagcagggatctggattttaaataaaatttactgttaaaaa 27399448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 28937426 - 28937357
Alignment:
Q  65 tttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    ||||||||||||  |||| |||||||| |||||||| | ||| ||||||||| |||||||| ||||||||    
T  28937426 tttgtattctcaatttcaccggtctctcttcgtcttgaacagagatctggttatttaataatatttgctg 28937357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 45354606 - 45354530
Alignment:
Q  65 tttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||||  | ||||||||||||| ||||||| |||| |||| | ||| || ||||||||||| |||||||||    
T  45354606 tttgtattctctaaatcatcggtctctgctcgtcttgagcacggatatagtttttaaataaaatttgatgttaaaaa 45354530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 37063 - 37161
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||  ||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||| |||||||||||||| |||| ||||    
T  37063 tgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtcttgagcagggatcaggttgtttaataaattttgttgtt 37161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 34230549 - 34230659
Alignment:
Q  30 ttttttgctgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatt 129  Q
    ||||||| |||||||| |||||||| |||||||||||||||||| ||| |||| || |||||||||||||| ||||| ||| |||||||||||||| |||    
T  34230549 ttttttggtgttccgcctatatacggcgtcttttgtttgtattcgcag-ttcaccgatctctgttcgtcttgagcagagatatggttgtttaataatatt 34230647  T
Q  130 tgctgttaaaaa 141  Q
    | || |||||||    
T  34230648 tactattaaaaa 34230659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 7696317 - 7696415
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| ||||||||    ||||||||||||||||||  ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  7696317 tgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggttgttcaataaaatttgctgtt 7696415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 25504604 - 25504511
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||| || ||||||||||||||||| || ||| |||| |||||| ||||| |||||||||||| || ||||||||||||||||||| ||||    
T  25504604 tatatacggcgccttttgtttgtattctctgaatcaccggtttctgtttgtcttgagcagggatctgatt-tttaataaaatttgctgttcaaaa 25504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 10772903 - 10772971
Alignment:
Q  60 ttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaat 128  Q
    ||||||||||||||| || |||||||||||||||||||||| | |||||||  ||||||||||||||||    
T  10772903 ttttgtttgtattcttagtttcatcggtctctgttcgtcttgaacagggattaggttgtttaataaaat 10772971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 29139675 - 29139574
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||| || |||||||||| ||||| ||||||| ||||| |||| |||||| |||| ||||  ||||| |||||||||||||||||||| ||| |||||    
T  29139675 tgttccactaatatacgacgccttttatttgtatcctcagtttcaccggtctttgtttgtct--agcagagatctggttgtttaataaaaattgttgtta 29139578  T
Q  138 aaaa 141  Q
    ||||    
T  29139577 aaaa 29139574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 29997301 - 29997404
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||||||||||||  | ||||||||| |||| |||  |||||||||||||||||||||| | ||| || | | ||||||||||||||||| ||||     
T  29997301 tgttccgcttatatacggtgccttttgtttttattttcaatttcatcggtctctgttcgtctttaccagagaccagattgtttaataaaatttgttgttt 29997400  T
Q  138 aaaa 141  Q
    ||||    
T  29997401 aaaa 29997404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 33788350 - 33788248
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||||||| || |||| |||||||||||| |  ||| ||||||||||||||||| ||||| ||| ||||| || ||||||||||||||||     
T  33788350 tgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttggtt-ttaaataaaatttgctgttc 33788252  T
Q  138 aaaa 141  Q
    ||||    
T  33788251 aaaa 33788248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 13337606 - 13337695
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaa 127  Q
    |||||| | ||||||||||| ||||||||||||||||| | |||| ||||||||||||||||| || | ||| | |||||||||| ||||    
T  13337606 tgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttgagtatggaccaggttgtttaaaaaaa 13337695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 42802451 - 42802540
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    ||||||||||  ||||||||||||||||||| ||||  | |||||||||||||| |  ||||||  ||||||||||||||||||| ||||    
T  42802451 tatatacgacaccttttgtttgtattctcagtttcactgatctctgttcgtcttgaatagggattaggttgtttaataaaatttgttgtt 42802540  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 33533467 - 33533371
Alignment:
Q  40 ttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||| |||||| | || ||||||||||||| || || |||| | ||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||    
T  33533467 ttccgcctatatatggcgccttttgtttgtatccttagtttcaccagtctctgttcgtcttgagcagagatctggctgttaaataaaatttgttgtt 33533371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 4472299 - 4472402
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||  ||||||||||| |||| |||||||||||| |||||| ||  |||||||| |||| | | |||||| | ||||| ||||||||||||||||     
T  4472299 tgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctgttcatcttgaacggggatcagattgttgaataaaatttgctgttc 4472398  T
Q  138 aaaa 141  Q
    ||||    
T  4472399 aaaa 4472402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 41086529 - 41086431
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||| ||| ||||||||| |  |||| ||||||| ||||| ||||  |||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||    
T  41086529 tgtttcgcctatatacgatgctttttctttgtatgctcagtttcactggtctctgttcgtcttgagcagagatctagttgtttaacaaaatttgttgtt 41086431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 44594043 - 44594136
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||| |||||| ||||||||||||||||| || | ||| |||| ||||||| || || |||||||||||| |||| ||||||||| |||||||||    
T  44594043 tatacacgacgccttttgtttgtattctctgaattatcagtctatgttcgttttgagtagggatctggtt-tttattaaaatttgttgttaaaaa 44594136  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 22884839 - 22884746
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttg 131  Q
    |||||||| ||||||||||| |||| ||||||||||||    || ||||||| |||||||||| ||||| ||| ||||| || |||||||||||    
T  22884839 tgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcagagatttggtttttaaataaaatttg 22884746  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 4975101 - 4975204
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||| || ||||||||||| |||| ||||||||||| || ||||   ||||||||||||||| ||||| || ||| | ||| ||||||||||| ||||     
T  4975101 tgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttgttt 4975200  T
Q  138 aaaa 141  Q
    ||||    
T  4975201 aaaa 4975204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 4993009 - 4993112
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||| || ||||||||||| |||| ||||||||||| || ||||   ||||||||||||||| ||||| || ||| | ||| ||||||||||| ||||     
T  4993009 tgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttgttt 4993108  T
Q  138 aaaa 141  Q
    ||||    
T  4993109 aaaa 4993112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 12343177 - 12343264
Alignment:
Q  54 gacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||| |||||||||||||  ||| |||||||||||| ||||| | | |||   |||||||| |||||||||||||||| ||||    
T  12343177 gacgtctttagtttgtattctcaatttcgtcggtctctgtttgtcttgaacggggccatggttgttaaataaaatttgctgtttaaaa 12343264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 29487484 - 29487558
Alignment:
Q  66 ttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||||  || ||| |||||||||||| |||| ||||||||||||||| |||||||||||||| |||| ||||    
T  29487484 ttgtattctatgaatcaccggtctctgttcatcttgagcagggatctggtt-tttaataaaatttgttgtttaaaa 29487558  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 10173304 - 10173206
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| ||||||| |||  ||| ||||||||| |  | |||| || |||||||||||||| |||||| ||||||||||| | ||||||||| ||||    
T  10173304 tgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcaggaatctggttgttaagtaaaatttgatgtt 10173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 20572437 - 20572527
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    ||||||||||   |||||||| ||||||| || |||||||||||||||||| || || || ||| ||||| || ||||||||||| |||||    
T  20572437 tatatacgacacattttgtttctattctctgaatcatcggtctctgttcgttttgaggagagatgtggtttttaaataaaatttgttgtta 20572527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 37559833 - 37559915
Alignment:
Q  59 cttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||| |||||||||||||  |||| || |||||||||||||||| |||||||||  || || ||||||||||| |||| ||||    
T  37559833 ctttagtttgtattctcaatttcaccgatctctgttcgtcttaaacagggatctcatttttaaataaaatttgttgtttaaaa 37559915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 41113465 - 41113403
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtctt 100  Q
    |||||||| ||||||| | |||||| |||||||||||||| |||| |||||||| ||||||||    
T  41113465 tgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtctt 41113403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 15817099 - 15817011
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaa 127  Q
    |||||||||||||||||||||||||  |||||| ||||  ||| |  ||||||||||| |||| ||||| ||||| ||| ||||||||||    
T  15817099 tgttccgcttatatacgacgtctttattttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtt-tttaataaaa 15817011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 27740344 - 27740435
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    |||||| | ||||||||||| |||| ||||||||| || || |||||| ||| |||||||||| |||| | |||||||| || ||||||||||    
T  27740344 tgttccacctatatacgacgcctttagtttgtattatctgaatcatcgatctttgttcgtcttgagca-gaatctggtttttaaataaaattt 27740435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 37770375 - 37770280
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||| |||||||||||    ||||||||||||||| ||||| || |||||||| ||||| | || |||||| | |||| ||||||||||| ||||    
T  37770375 tgttccgcctatatacgacgc---ttgtttgtattctcatattcaccgatctctgtttgtcttgatcatggatctagctgttcaataaaatttgttgtt 37770280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 3411774 - 3411722
Alignment:
Q  87 tctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    ||||||||| |||||||||| |||||||||  ||||||||||||| |||||||||    
T  3411774 tctctgttcttcttaagcagtgatctggtt--ttaataaaatttgttgttaaaaa 3411722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 30965974 - 30965917
Alignment:
Q  84 cggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||| |||||||||| || |||||||||||| || |||||| ||| ||||||||||    
T  30965974 cggtctttgttcgtcttgagtagggatctggtttttaaataaatttttctgttaaaaa 30965917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 40360684 - 40360652
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  40360684 tgttccgcctatatacgacgtcttttgtttgta 40360652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 12197800 - 12197697
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||| |||||| |||| |||||||||||| |||||| || ||||| |||||||| ||||  ||||| |||||| |||||||||| ||||||    
T  12197800 tgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaatttactgtta 12197701  T
Q  138 aaaa 141  Q
    ||||    
T  12197700 aaaa 12197697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 12442228 - 12442125
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||||| |||| |||||| |||| |||||||||||| |||||| || ||||| |||||||| ||||  ||||| |||||| |||||||||| ||||||    
T  12442228 tgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaatttactgtta 12442129  T
Q  138 aaaa 141  Q
    ||||    
T  12442128 aaaa 12442125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 25184846 - 25184744
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||| | |||||||||||| ||| ||||||| |||| || ||| |||||||| || ||||| || |||||| ||||| |||||||||||||| ||| |    
T  25184846 tgttccacctatatacgacgtttttagtttgtactctctgaatcaccggtctctttttgtcttgagtagggatttggtt-tttaataaaatttgatgtaa 25184748  T
Q  138 aaaa 141  Q
    ||||    
T  25184747 aaaa 25184744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 17656461 - 17656363
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||  ||||||||||| ||||||||| |||  |||  |||| |||||||| ||  || | |||||||| ||| ||||||||||||||||||||||    
T  17656461 tgttccgtctatatacgacgccttttgtttatatgttcaatttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctgtt 17656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 5214989 - 5214941
Alignment:
Q  81 catcggtctctgttcgtcttaagcagggatctggttgtttaataaaattt 130  Q
    ||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  5214989 catcggtctctgttcgtcttatgcagggatctgatt-tttaataaaattt 5214941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 8862346 - 8862251
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtt 136  Q
    |||||||  |||||||| || |||||||||||| |||||  |||| || ||| |||||||||| || ||||||||||||| ||| ||||||||| ||||    
T  8862346 tgttccgtctatatacggcgccttttgtttgtactctca--ttcaccgatct-tgttcgtcttgagtagggatctggttgcttagtaaaatttgttgtt 8862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 43312348 - 43312277
Alignment:
Q  70 attctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||| ||||||||||||| |||||||| ||||| || | ||| ||| ||||||||||| |||| ||||    
T  43312348 attctcagtttcatcggtctctattcgtcttgagcagagaccaggtggttaaataaaatttgttgtttaaaa 43312277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 8843833 - 8843743
Alignment:
Q  42 ccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctg 134  Q
    |||| |||||||| ||  ||| ||||||||| || | |||| ||||||||||||||||| || |||||| || || |||||||||||||||||    
T  8843833 ccgcctatatacggcgcatttcgtttgtatt-tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctg 8843743  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 720 - 617
Alignment:
Q  38 tgttccgcttatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctggttgtttaataaaatttgctgtta 137  Q
    |||||| | |||||||||||||||| |||||||||||| || |||  | ||| |||||||||| |||  |||||  ||| || ||||||| ||| |||||    
T  720 tgttccacatatatacgacgtctttagtttgtattctctgaatcacggatctttgttcgtcttgagctcggatcgagtttttaaataaaagttgatgtta 621  T
Q  138 aaaa 141  Q
    ||||    
T  620 aaaa 617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 1332 - 1281
Alignment:
Q  90 ctgttcgtcttaagcagggatctggttgtttaataaaatttgctgttaaaaa 141  Q
    |||||||| || |||||||||||||||| ||||||||||||| |||| ||||    
T  1332 ctgttcgttttgagcagggatctggttgcttaataaaatttgttgttgaaaa 1281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 58493 - 58560
Alignment:
Q  47 tatatacgacgtcttttgtttgtattctcagattcatcggtctctgttcgtcttaagcagggatctgg 114  Q
    |||||||| || ||||||||| |||| || | |||| |||||||| |||||||| |||||||||||||    
T  58493 tatatacggcgccttttgtttctattatctgtttcaccggtctcttttcgtcttgagcagggatctgg 58560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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