View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_41 (Length: 286)

Name: NF0594_low_41
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_41
NF0594_low_41
[»] chr1 (8 HSPs)
chr1 (100-239)||(9557065-9557205)
chr1 (11-87)||(9557241-9557317)
chr1 (14-88)||(34775205-34775279)
chr1 (11-92)||(9313011-9313092)
chr1 (21-94)||(27102509-27102582)
chr1 (14-65)||(17033950-17034001)
chr1 (12-87)||(27905766-27905840)
chr1 (28-87)||(38544404-38544463)
[»] chr3 (6 HSPs)
chr3 (11-90)||(4171075-4171154)
chr3 (11-92)||(50518760-50518841)
chr3 (14-92)||(48893027-48893105)
chr3 (11-90)||(14893261-14893340)
chr3 (13-81)||(37123710-37123778)
chr3 (11-91)||(25648013-25648093)
[»] chr5 (8 HSPs)
chr5 (14-92)||(26405222-26405300)
chr5 (11-92)||(25992330-25992411)
chr5 (11-88)||(26045634-26045711)
chr5 (21-88)||(13953929-13953996)
chr5 (29-88)||(30097666-30097725)
chr5 (18-92)||(7194979-7195053)
chr5 (50-92)||(37108128-37108170)
chr5 (11-92)||(8297800-8297880)
[»] chr2 (9 HSPs)
chr2 (11-92)||(7696290-7696371)
chr2 (30-92)||(34230530-34230592)
chr2 (11-92)||(13337579-13337660)
chr2 (11-94)||(37770324-37770404)
chr2 (12-88)||(41113412-41113488)
chr2 (21-88)||(4472276-4472343)
chr2 (14-92)||(29139624-29139702)
chr2 (11-79)||(29997287-29997355)
chr2 (33-65)||(40360652-40360684)
[»] chr6 (3 HSPs)
chr6 (11-91)||(3880283-3880363)
chr6 (29-92)||(6860360-6860425)
chr6 (11-79)||(17278133-17278201)
[»] chr4 (6 HSPs)
chr4 (12-81)||(42719496-42719565)
chr4 (21-89)||(16832701-16832769)
chr4 (21-65)||(35947988-35948032)
chr4 (32-88)||(49747861-49747917)
chr4 (14-56)||(9262808-9262850)
chr4 (21-81)||(48098646-48098706)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-88)||(37040-37117)
[»] scaffold1613 (1 HSPs)
scaffold1613 (28-87)||(683-742)
[»] chr7 (5 HSPs)
chr7 (11-65)||(6726090-6726144)
chr7 (11-89)||(42532930-42533008)
chr7 (14-79)||(16828774-16828839)
chr7 (29-90)||(22567781-22567841)
chr7 (21-90)||(39013573-39013642)
[»] chr8 (1 HSPs)
chr8 (21-88)||(10248246-10248314)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 9557205 - 9557065
Alignment:
Q  100 cacccagttgctgattcaattaattcagatg-ttgctttattatgggtgcatgtccaagcggcccagttttgtgtgttatatattgctatctagagaaaa 198  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9557205 cacccagttgcagattcaattaattcagatggttgctttattatgggtgcatgtccaagcggcccagttttgtgtgttatatattgctatctagagaaaa 9557106  T
Q  199 aggctaaaactggcaattaattgctcgagagacacaggcta 239  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9557105 aggctaaaactggcaattaattgcttgagagacacaggcta 9557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 9557317 - 9557241
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaa 87  Q
    ||||||||| |||||||||||||||||| |||| || |||||||||| || |||| |  ||||||||||||||||||    
T  9557317 cagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 34775279 - 34775205
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    |||||||| || |||||||||||||| |||| || |||||||| |||||||| |  |||||||||||||||||||    
T  34775279 agaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaa 34775205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 9313011 - 9313092
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||| |||| || | ||||||| |||||| ||||||||||| |||||||| |  |||||||||||| ||||||||||    
T  9313011 cagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacc 9313092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 27102582 - 27102509
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacaccat 94  Q
    |||| |||||||||||||||||||  | |||||||| |||||||| |  |||||||||||| ||||||||||||    
T  27102582 tgaacctgagaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaacaccat 27102509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 17034001 - 17033950
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaaca 65  Q
    |||||| ||| || || |||||||||||||| ||||||||||||||||||||    
T  17034001 agaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaaca 17033950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 27905840 - 27905766
Alignment:
Q  12 agagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaa 87  Q
    |||||||| |||||| |||| ||||||| | || ||||||||||| | |||||| ||||||||||||||| |||||    
T  27905840 agagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaacaccataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 38544404 - 38544463
Alignment:
Q  28 gagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaa 87  Q
    |||||||||||| |||||||||||||||| | |||||| |  |||||||||||| |||||    
T  38544404 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 4171154 - 4171075
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaaca 90  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||| |  |||||||||||| ||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 4171075  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 50518760 - 50518841
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||| | |||| |||||||||||||||||||  |||||||||| |||||||| |  |||||||||||| ||||||||||    
T  50518760 cagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacc 50518841  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 48893027 - 48893105
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    |||| |||||| ||||||||||||||||| || | |||||||||| |||||| |  ||||||||||| |||||||||||    
T  48893027 agacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaaataaacactttaaaaacacc 48893105  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 14893340 - 14893261
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaaca 90  Q
    ||||||| | |||| | |||| ||||||||||||||| |||||||| |||||||| |  |||||||||||| ||||||||    
T  14893340 cagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaaca 14893261  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 37123778 - 37123710
Alignment:
Q  13 gagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacacc 81  Q
    |||||||||||| ||||||||||||||||||| |||| || |||  ||||||| |  ||||||||||||    
T  37123778 gagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaacacc 37123710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 25648093 - 25648013
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacac 91  Q
    |||||| || |||| || |||||||||||||||| ||  |||||||  ||||||| |  |||||||||||| |||||||||    
T  25648093 cagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaacac 25648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26405222 - 26405300
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    |||||| |||| ||||||||||||||||||| |||||||||||  ||||||| |  |||||||||||||||||||||||    
T  26405222 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaaacacc 26405300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 25992411 - 25992330
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||| ||||  ||| |||||||||||||| || |||||||| |||||||| |  | |||||||||| ||||||||||    
T  25992411 cagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgacaataaacaccctaaaaacacc 25992330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 26045634 - 26045711
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    ||||||||| ||||  |||| ||||||||||||| || ||||||||  ||||||| | ||||||||||||| ||||||    
T  26045634 cagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaa 26045711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 13953929 - 13953996
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    |||| |||||| ||||||| |||| || |||||||| |||||||| |  |||||||||||||||||||    
T  13953929 tgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 30097725 - 30097666
Alignment:
Q  29 agaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    ||||||||||| ||||||| |||||||| |||||||| |  |||||||||||| ||||||    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaa 30097666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 7194979 - 7195053
Alignment:
Q  18 cgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||| ||||||||| | ||||||   ||||| |||| |||||||| | ||||||||||||| ||||||||||    
T  7194979 cgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacatccaaaaataaacaccctaaaaacacc 7195053  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 37108170 - 37108128
Alignment:
Q  50 gtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaaacacc 37108128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 8297880 - 8297800
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||| |||| ||||||||||||| ||||| ||| ||| ||| |||||||| |  |||||| ||||| ||||||||||    
T  8297880 cagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaacacc 8297800  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 7696371 - 7696290
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||||||||  ||||||||||||||||||    |||||||| |||||||| | ||||||||||||||||||||||||    
T  7696371 cagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaaacacc 7696290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 34230592 - 34230530
Alignment:
Q  30 gaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||| | ||||||||||    
T  34230592 gaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaacacc 34230530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 13337660 - 13337579
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||| |||| | ||||||||||||||||| ||||||||||| | |||||| |  |||||||||||| ||||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacc 13337579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 37770324 - 37770404
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacaccat 94  Q
    |||||| || ||||| |||||||||||||||    ||||||||||| |||||||| |  |||||||||||| ||||||||||||    
T  37770324 cagagatcggtgaatatgagaatacaaacaag---cgtcgtatataggcggaacacccgaaaataaacaccctaaaaacaccat 37770404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 41113412 - 41113488
Alignment:
Q  12 agagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    |||||||| |||| |||||||||||||| |||||| | ||||||| |||||||| |  |||||||| ||| ||||||    
T  41113412 agagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 4472343 - 4472276
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    |||||| |||||||||||| |||| |||||||||||  ||||||| |  |||||||||||| ||||||    
T  4472343 tgaatcagagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 29139624 - 29139702
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    |||||| |||| ||||| ||||||| ||||| |||||||||| || ||||||    |||||||| ||||||||||||||    
T  29139624 agaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaaacacc 29139702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29997355 - 29997287
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaaca 79  Q
    ||||||||||||||  ||| |||| ||||||||| |  ||||||||||||||||| |  ||||||||||    
T  29997355 cagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaaca 29997287  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 40360652 - 40360684
Alignment:
Q  33 tacaaacaaaagacgtcgtatataagcggaaca 65  Q
    |||||||||||||||||||||||| ||||||||    
T  40360652 tacaaacaaaagacgtcgtatataggcggaaca 40360684  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 3880283 - 3880363
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaacac 91  Q
    ||||||||| |||| |||| ||||||||||||||    ||||||||||||||||| ||||||||||||||| |||||||||    
T  3880283 cagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaacaccctaaaaacac 3880363  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 6860425 - 6860360
Alignment:
Q  29 agaatacaaacaaaagacgtcgtatata--agcggaacagcaaaaaataaacaccttaaaaacacc 92  Q
    ||||||||||||||||||| ||||||||   |||||||| | ||||||||||||| ||||||||||    
T  6860425 agaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaacacc 6860360  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 17278133 - 17278201
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaaca 79  Q
    ||||||||| ||| || |||||||||| | |||| ||||||||||| |||||||| |  ||||||||||    
T  17278133 cagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaaca 17278201  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 42719565 - 42719496
Alignment:
Q  12 agagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacacc 81  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||||| | |  ||||||||||||    
T  42719565 agagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacacc 42719496  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 16832701 - 16832769
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaac 89  Q
    |||| ||||||||||||||||||| ||  | ||||| |||||||| ||||||||||||||| |||||||    
T  16832701 tgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaac 16832769  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 35947988 - 35948032
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaaca 65  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  35947988 tgaatctgagaatacaaacaaaagacgccatatataagcggaaca 35948032  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 49747917 - 49747861
Alignment:
Q  32 atacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    ||||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||||    
T  49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaa 49747861  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 9262850 - 9262808
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatata 56  Q
    ||||||||||| ||||||||||||||||||| || ||||||||    
T  9262850 agaccgatgaaactgagaatacaaacaaaaggcgccgtatata 9262808  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 48098706 - 48098646
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacacc 81  Q
    |||| |||| |||||||||||||||||  ||||||| |||||||| |  ||||||||||||    
T  48098706 tgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacacc 48098646  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 37117 - 37040
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaa 88  Q
    ||||||||| |||| |||| |||||||||||||||||  ||||||| |||||||| |  |||||||||||| ||||||    
T  37117 cagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaa 37040  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 683 - 742
Alignment:
Q  28 gagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaa 87  Q
    |||||||||||| |||||||||||||||| | |||||| |  |||||||||||| |||||    
T  683 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6726090 - 6726144
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaaca 65  Q
    |||||| || |||| |||||||||||||||||| ||| |||||||| ||||||||    
T  6726090 cagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaaca 6726144  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 42532930 - 42533008
Alignment:
Q  11 cagagaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaac 89  Q
    ||||||||| || | |||||||||||| |||||| || |||||||| |||||||| |   ||||||||||| |||||||    
T  42532930 cagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaac 42533008  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 16828774 - 16828839
Alignment:
Q  14 agaccgatgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaaca 79  Q
    |||||| |||| ||||||||||||||||||  || |||||||| |||||||| |  ||||||||||    
T  16828774 agaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaaca 16828839  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 22567781 - 22567841
Alignment:
Q  29 agaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaaca 90  Q
    |||||||||||||||| || |||||||| |||||||| ||||||| | ||||| ||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaaca-caaaaaaaacacaccataaaaaca 22567841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 39013642 - 39013573
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaacagcaaaaaataaacaccttaaaaaca 90  Q
    |||| |||||||||||||||| |||||| |||||||  ||||| | | ||||||||||||| | ||||||    
T  39013642 tgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacaccctgaaaaca 39013573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 10248246 - 10248314
Alignment:
Q  21 tgaatctgagaatacaaacaaaagacgtcgtatataagcggaaca-gcaaaaaataaacaccttaaaaa 88  Q
    |||| |||||||||||| | |||| ||||||||||| ||||||||  | ||||| ||||||||||||||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaa 10248314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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