View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_45 (Length: 263)

Name: NF0594_low_45
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_45
NF0594_low_45
[»] chr2 (19 HSPs)
chr2 (8-263)||(3973496-3973751)
chr2 (121-205)||(22878165-22878249)
chr2 (121-203)||(28803451-28803533)
chr2 (63-117)||(5781685-5781739)
chr2 (161-206)||(750841-750886)
chr2 (61-102)||(3059289-3059330)
chr2 (60-117)||(10198480-10198537)
chr2 (146-207)||(17775383-17775444)
chr2 (148-205)||(43199929-43199986)
chr2 (81-204)||(43456627-43456743)
chr2 (60-108)||(1647249-1647297)
chr2 (61-117)||(1939332-1939388)
chr2 (121-205)||(4350757-4350841)
chr2 (123-207)||(27317449-27317532)
chr2 (121-205)||(30552562-30552646)
chr2 (61-117)||(32821823-32821879)
chr2 (61-117)||(34652036-34652092)
chr2 (61-117)||(35993380-35993436)
chr2 (161-205)||(37419586-37419630)
[»] chr4 (25 HSPs)
chr4 (128-206)||(53315400-53315478)
chr4 (121-194)||(27725281-27725354)
chr4 (66-117)||(29467624-29467675)
chr4 (121-207)||(27123269-27123355)
chr4 (54-109)||(19429716-19429771)
chr4 (121-205)||(6428085-6428169)
chr4 (61-117)||(11264315-11264371)
chr4 (63-110)||(32799747-32799794)
chr4 (54-112)||(25487570-25487628)
chr4 (164-214)||(53034709-53034759)
chr4 (63-112)||(5131255-5131304)
chr4 (60-117)||(6978962-6979019)
chr4 (166-207)||(17822782-17822823)
chr4 (61-102)||(18019986-18020027)
chr4 (122-191)||(18628486-18628555)
chr4 (60-117)||(21952961-21953018)
chr4 (121-206)||(32071935-32072015)
chr4 (166-207)||(42403940-42403981)
chr4 (76-108)||(1312870-1312902)
chr4 (121-193)||(2996640-2996712)
chr4 (61-101)||(7694026-7694066)
chr4 (61-109)||(11158365-11158413)
chr4 (166-206)||(27043748-27043788)
chr4 (161-205)||(28259380-28259424)
chr4 (76-108)||(45927378-45927410)
[»] chr6 (10 HSPs)
chr6 (121-207)||(2460068-2460154)
chr6 (61-117)||(34939758-34939814)
chr6 (173-206)||(9202253-9202286)
chr6 (168-205)||(31776191-31776228)
chr6 (61-101)||(281864-281904)
chr6 (60-108)||(9149111-9149159)
chr6 (60-108)||(9177905-9177953)
chr6 (149-205)||(29249488-29249544)
chr6 (80-112)||(30004923-30004955)
chr6 (60-112)||(34538223-34538275)
[»] chr3 (13 HSPs)
chr3 (124-205)||(50211805-50211886)
chr3 (61-112)||(31403161-31403212)
chr3 (61-112)||(36646387-36646438)
chr3 (59-107)||(43080111-43080160)
chr3 (64-117)||(48048982-48049035)
chr3 (61-117)||(22214659-22214715)
chr3 (61-117)||(30923898-30923954)
chr3 (121-203)||(20173811-20173891)
chr3 (130-193)||(22667479-22667542)
chr3 (130-193)||(22724118-22724181)
chr3 (120-207)||(49845457-49845544)
chr3 (80-117)||(43115089-43115126)
chr3 (165-206)||(47903998-47904039)
[»] chr8 (17 HSPs)
chr8 (61-101)||(30277261-30277301)
chr8 (61-115)||(8062343-8062397)
chr8 (80-117)||(11795125-11795162)
chr8 (161-206)||(32976480-32976525)
chr8 (61-117)||(11188155-11188211)
chr8 (61-117)||(14949880-14949936)
chr8 (61-108)||(2458575-2458622)
chr8 (60-107)||(10062151-10062198)
chr8 (61-108)||(31705099-31705146)
chr8 (60-117)||(3254238-3254295)
chr8 (154-207)||(11059646-11059699)
chr8 (60-117)||(20672763-20672820)
chr8 (76-117)||(25869266-25869307)
chr8 (78-193)||(30191072-30191180)
chr8 (166-207)||(38602439-38602480)
chr8 (61-117)||(4055616-4055672)
chr8 (76-112)||(28769344-28769380)
[»] chr7 (18 HSPs)
chr7 (54-110)||(1710737-1710793)
chr7 (54-117)||(39539781-39539844)
chr7 (76-117)||(27496407-27496448)
chr7 (76-117)||(27503065-27503106)
chr7 (62-205)||(33894642-33894778)
chr7 (61-117)||(24363601-24363657)
chr7 (80-194)||(48157050-48157157)
chr7 (130-205)||(1418495-1418570)
chr7 (120-203)||(8427079-8427162)
chr7 (61-107)||(40428569-40428615)
chr7 (166-203)||(9210933-9210970)
chr7 (64-117)||(12234889-12234942)
chr7 (76-117)||(27517856-27517897)
chr7 (80-117)||(44808191-44808228)
chr7 (121-205)||(23214922-23215006)
chr7 (121-205)||(31341202-31341286)
chr7 (166-206)||(37064386-37064426)
chr7 (52-112)||(39280974-39281034)
[»] chr1 (15 HSPs)
chr1 (121-207)||(23373230-23373316)
chr1 (161-205)||(6292599-6292643)
chr1 (52-100)||(24146297-24146345)
chr1 (61-112)||(6279413-6279464)
chr1 (66-117)||(10439705-10439756)
chr1 (145-207)||(24460318-24460380)
chr1 (54-99)||(601048-601093)
chr1 (79-112)||(4768834-4768867)
chr1 (161-206)||(12564417-12564462)
chr1 (68-117)||(36151505-36151554)
chr1 (61-117)||(12477287-12477343)
chr1 (61-101)||(25479595-25479635)
chr1 (121-205)||(26679421-26679505)
chr1 (61-117)||(35925704-35925760)
chr1 (61-117)||(47020521-47020577)
[»] chr5 (14 HSPs)
chr5 (76-194)||(29590560-29590670)
chr5 (61-112)||(40205079-40205130)
chr5 (60-117)||(2468444-2468501)
chr5 (125-206)||(11297114-11297195)
chr5 (161-210)||(32194006-32194055)
chr5 (161-206)||(35036899-35036943)
chr5 (159-207)||(3280653-3280701)
chr5 (162-206)||(14331474-14331518)
chr5 (80-112)||(15074754-15074786)
chr5 (61-101)||(16889749-16889789)
chr5 (76-108)||(28413293-28413325)
chr5 (61-117)||(36638761-36638817)
chr5 (61-101)||(38104873-38104913)
chr5 (159-207)||(42034165-42034213)
[»] scaffold0159 (1 HSPs)
scaffold0159 (63-117)||(27017-27071)
[»] scaffold0459 (1 HSPs)
scaffold0459 (121-205)||(6613-6697)
[»] scaffold0366 (1 HSPs)
scaffold0366 (121-205)||(6611-6695)
[»] scaffold0020 (1 HSPs)
scaffold0020 (161-213)||(159884-159936)
[»] scaffold0003 (1 HSPs)
scaffold0003 (61-109)||(306340-306388)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 3973496 - 3973751
Alignment:
Q  8 tagcataggtgcttatgtatatgctatttatttgacaacataaatattttcatataagctatcctagggagtttatggaaataagctgaaaacaggttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973496 tagcataggtgcttatgtatatgctatttatttgacaacataaatattttcatataagctatcctagggagtttatggaaataagctgaaaacaggttat 3973595  T
Q  108 ggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973596 ggacacgtcaatcgtcataagttgtttccatatgctctctcaaacagtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 3973695  T
Q  208 gcccaagaggagaacacattcaaggaactacctgaatttccgctccacttgtctgc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973696 gcccaagaggagaacacattcaaggaactacctgaatttccgctccacttgtctgc 3973751  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 22878165 - 22878249
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||| ||||||||||| | || | ||||| |||| | |||||||||| ||||||||||||||||||||||| ||||||||||    
T  22878165 gtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 28803533 - 28803451
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaa 203  Q
    ||||||||||||||||||||| || ||||||| |||| | | ||||||||  | || ||||||||||||||||| ||||||||    
T  28803533 gtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 5781685 - 5781739
Alignment:
Q  63 aagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||| ||| ||| ||||||||||||||||||||||| ||||| ||| ||||    
T  5781685 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtca 5781739  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 750841 - 750886
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||||||| || | ||||||||||||||||| |||||||||||    
T  750841 aagtgcttataccaatagataagctcaaataagtcaatccaaacag 750886  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 3059330 - 3059289
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacag 102  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  3059330 ataagctatgctagagagtttatggaaataaactgaaaacag 3059289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 10198537 - 10198480
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||| ||||||||| ||| ||||||||||||||||| ||||| ||||| ||| ||||    
T  10198537 tataatctatcctagagagattatggaaataagctgacaacagcttatgaacatgtca 10198480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 17775444 - 17775383
Alignment:
Q  146 ctcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||| |||||| ||| |||||| ||||| |||| |||||||||||| |||||| |||||    
T  17775444 ctcaaacagtcttaaaagagcttatgtcagtagatatgctcaaataagttaatccagacagg 17775383  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 43199929 - 43199986
Alignment:
Q  148 caaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||| |||| | |||||||||||| ||| |||||| |||||||| ||||||||||||    
T  43199929 caaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatccaaaca 43199986  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 43456743 - 43456627
Alignment:
Q  81 tatggaaataagctgaaaacaggttatggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggat 180  Q
    |||||||||||||||||||||| |||||||||        ||||| |||||||| || | ||||  |||||| |||||| ||||| |||| | |||  ||    
T  43456743 tatggaaataagctgaaaacagtttatggaca-------tgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaat 43456651  T
Q  181 aagctcaaataagtgaatccaaac 204  Q
    ||| |||||||||| |||||||||    
T  43456650 aagttcaaataagtaaatccaaac 43456627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 1647249 - 1647297
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||||||||  ||| ||| ||||||||||||||||||||||| |||||    
T  1647249 tataagctattatagagagcttatggaaataagctgaaaacagcttatg 1647297  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 1939388 - 1939332
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||| || | ||| ||||||||||||| ||||||||| ||||||||| ||||    
T  1939388 ataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtca 1939332  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 4350757 - 4350841
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||| ||||| |||| | || |||||||  |||  ||||||||||| ||||| || |||||||||||||  ||||||||||    
T  4350757 gtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaaca 4350841  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 27317449 - 27317532
Alignment:
Q  123 cataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    |||||||||||| |||| | || ||||||| |||| ||||   ||||| || || ||||||||||||||||| ||||||||||||    
T  27317449 cataagttgttttcataagttctctcaaacagtctcataaaa-cttatgtcggtagataagctcaaataagtcaatccaaacagg 27317532  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 30552646 - 30552562
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||||||||||| |||  ||  ||||||| || | | ||||||||||| |||| |||||||||||||| || |||| |||||    
T  30552646 gtcataagttgtttcgataacctatctcaaacagtttcaaaagtgcttataccagtagataagctcaaatatgtcaatctaaaca 30552562  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 32821823 - 32821879
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||  ||| |||| ||||||| |||||||||| ||||||||| ||||    
T  32821823 ataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtca 32821879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 34652092 - 34652036
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||| | | ||| ||||||||||||| ||||||||| ||||||||| ||||    
T  34652092 ataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtca 34652036  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 35993436 - 35993380
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||| ||| ||  ||||| ||||||||||||||||  ||||||||||||||    
T  35993436 ataagctatcatagagaacttatgaaaataagctgaaaacaatttatggacacgtca 35993380  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 37419630 - 37419586
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||||||| ||| ||||| ||||||||||| ||||||||||    
T  37419630 aagtgcttatataagtagataaactcaaataagtcaatccaaaca 37419586  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 53315400 - 53315478
Alignment:
Q  128 gttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||| |||| |||| | ||||  |||||||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  53315400 gttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggataagctcaaataagtcaatccaaacag 53315478  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 27725281 - 27725354
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagt 194  Q
    |||||||||| |||||||| |||| ||||||| ||| |||| |||||||| ||||| |||||||||||||||||    
T  27725281 gtcataagttatttccataagctctctcaaacagtcgtatatgtgcttatctcagtagataagctcaaataagt 27725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 29467675 - 29467624
Alignment:
Q  66 ctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  29467675 ctatcctagagagtttatggaaataagctgaaaacagcttatggacatgtca 29467624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 27123355 - 27123269
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||||||||||||||| |||| ||||||| |||| | |||| |||||   |||  |||||||||||||||| ||||||||||||    
T  27123355 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacagg 27123269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 19429716 - 19429771
Alignment:
Q  54 ttttcatataagctatcctagggagtttatggaaataagctgaaaacaggttatgg 109  Q
    |||| |||||||||||||| | ||| ||||||||||||||||||||||| ||||||    
T  19429716 ttttgatataagctatcctggagagcttatggaaataagctgaaaacagcttatgg 19429771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 6428085 - 6428169
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||||||||| ||||  ||| ||||||| |||| | ||||||||||| || |  |||||||||||||||| ||| ||||||    
T  6428085 gtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaaca 6428169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 11264315 - 11264371
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||| ||||||| ||| ||||||||||||| ||||||||| ||||||||| ||||    
T  11264315 ataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtca 11264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 32799794 - 32799747
Alignment:
Q  63 aagctatcctagggagtttatggaaataagctgaaaacaggttatgga 110  Q
    |||||||| ||| |||||||| |||||||||||||||||| |||||||    
T  32799794 aagctatcatagagagtttatcgaaataagctgaaaacagcttatgga 32799747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 25487628 - 25487570
Alignment:
Q  54 ttttcatataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||||||||| || ||||  ||||||||||||| ||| ||||| |||||||||    
T  25487628 ttttcatataagctattctggggaacttatggaaataagttgataacagcttatggaca 25487570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 53034759 - 53034709
Alignment:
Q  164 tgcttatatcagtggataagctcaaataagtgaatccaaacagggcccaag 214  Q
    ||||||||||||| ||||||||||||||||| || ||||||| | ||||||    
T  53034759 tgcttatatcagtagataagctcaaataagtcaaaccaaacaagccccaag 53034709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 5131304 - 5131255
Alignment:
Q  63 aagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||| | ||| ||||||||||||||||||||||  |||||||||    
T  5131304 aagctatcctggagagcttatggaaataagctgaaaacaacttatggaca 5131255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 6979019 - 6978962
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||| ||||||  ||||||||| ||||||||||||||||| |||| |||| ||||    
T  6979019 tataagccatcctaaagagtttatgaaaataagctgaaaacagcttatagacatgtca 6978962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 17822823 - 17822782
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||    
T  17822823 cttatgtcagtagataagctcaaataagttaatccaaacagg 17822782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 18019986 - 18020027
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacag 102  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  18019986 ataagctatgctagagagtttatggaaataaactgaaaacag 18020027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 18628555 - 18628486
Alignment:
Q  122 tcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaata 191  Q
    ||||||||||||| |||| |||| | ||||| |||| | ||||| |||| ||||| ||||||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 21952961 - 21953018
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||  ||| ||| |||||||| || ||||||||||||||||| ||||    
T  21952961 tataagctatcctatagagcttaaggaaataaactaaaaacaggttatggacatgtca 21953018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 32071935 - 32072015
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    |||||||||||||||||||     |||||||| |||| | |||||||||| ||| | ||||| ||||||||||| | |||||||||    
T  32071935 gtcataagttgtttccata-----actcaaactgtctcacaagtgcttatgtcaatagataaactcaaataagtcagtccaaacag 32072015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 42403981 - 42403940
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||    
T  42403981 cttatgtcagttgataagctcaaataagtcaatccaaacagg 42403940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 1312870 - 1312902
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||||||||||||||||||||||||| |||||    
T  1312870 gagtttatggaaataagctgaaaacagtttatg 1312902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 2996640 - 2996712
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataag 193  Q
    |||||||||||||| |||| |||| ||||||| |||| | |||||||||| ||| |  ||||| |||||||||    
T  2996640 gtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataag 2996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 7694066 - 7694026
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    ||||| |||||| | ||||||||||||||||||||||||||    
T  7694066 ataagttatcctggagagtttatggaaataagctgaaaaca 7694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 11158413 - 11158365
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatgg 109  Q
    |||||||||| ||| ||| || |||||||||||||||||||| ||||||    
T  11158413 ataagctatcttagagagcttgtggaaataagctgaaaacagtttatgg 11158365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 27043788 - 27043748
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  27043788 cttatgtcagtagataagctcaaataagtcaatccaaacag 27043748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 28259380 - 28259424
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||    
T  28259380 aagtgcttatgtcagttgataagctcaaataagtcagtccaaaca 28259424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 45927378 - 45927410
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||||||||||||||||||||||||| |||||    
T  45927378 gagtttatggaaataagctgaaaacagcttatg 45927410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 2460154 - 2460068
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||||||||||||||| |||| ||||||| |||| | |||| |||||   |||  |||||||||||||||| ||||||||||||    
T  2460154 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacagg 2460068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 34939758 - 34939814
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||| | ||||||||||||||||||||||||||  ||||||||| ||||    
T  34939758 ataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtca 34939814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 9202286 - 9202253
Alignment:
Q  173 cagtggataagctcaaataagtgaatccaaacag 206  Q
    |||||||||||||||||||||| |||||||||||    
T  9202286 cagtggataagctcaaataagtcaatccaaacag 9202253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 31776228 - 31776191
Alignment:
Q  168 tatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  31776228 tatatcagtagataagctcaaataagtcaatccaaaca 31776191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 281904 - 281864
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    |||||||||||||| ||| | ||||||||||||||||||||    
T  281904 ataagctatcctagagagctcatggaaataagctgaaaaca 281864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 9149159 - 9149111
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||| |||||    
T  9149159 tataacctatcatagagagtttatggaaataagttgaaaacagattatg 9149111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 9177905 - 9177953
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||| |||||    
T  9177905 tataacctatcatagagagtttatggaaataagttgaaaacagattatg 9177953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 29249488 - 29249544
Alignment:
Q  149 aaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||| |||||| |||| |||||| ||||  |||||||||||||||| ||||||||||    
T  29249488 aaacagtcttacaagtacttataacagtaaataagctcaaataagtcaatccaaaca 29249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 30004923 - 30004955
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||||||||||| |||||||||    
T  30004923 ttatggaaataagctgaaaacagtttatggaca 30004955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 34538275 - 34538223
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||| |||||| |  |||||||||||||| || |||||||||    
T  34538275 tataagctatcctagagagtttgtataaataagctgaaaatagtttatggaca 34538223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 50211805 - 50211886
Alignment:
Q  124 ataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||||||| |||| | || ||||||| |||||| |||||||||| | ||| |||||||| |||||||| ||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaaca 50211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 31403161 - 31403212
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  31403161 ataagctatcctagagagttcatggtaataagctgaaaacagcttatggaca 31403212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 36646438 - 36646387
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||||||| |||||||| |||||||| ||||||||| |||||||||    
T  36646438 ataagctatcctagagagtttatagaaataagatgaaaacagcttatggaca 36646387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 43080160 - 43080111
Alignment:
Q  59 atataagctatcctaggg-agtttatggaaataagctgaaaacaggttat 107  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  43080160 atataagctatcctgggggagtttatggaaataagctgaaaacagcttat 43080111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 48049035 - 48048982
Alignment:
Q  64 agctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||| | ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  48049035 agctatcttggggaggttatggaaataagctgaaaacagcttatggacatgtca 48048982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 22214715 - 22214659
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||| ||  ||| ||||||||||||||||||| ||||||||| ||||    
T  22214715 ataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgtca 22214659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 30923954 - 30923898
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||| ||||||||| |||||||| |||||||||||||||||| |||| |||| ||||    
T  30923954 ataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtca 30923898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 20173891 - 20173811
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaa 203  Q
    ||||||||||||||||||| | ||  |||||| |||| | |||||||||| ||| | |||| |||||||||||| ||||||||    
T  20173891 gtcataagttgtttccataggttc--tcaaactgtctcacaagtgcttatttcaatagatacgctcaaataagtcaatccaaa 20173811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 22667479 - 22667542
Alignment:
Q  130 tgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataag 193  Q
    ||||||||||  ||| ||||||| |||| | |||||||||| ||||| ||||||||||||||||    
T  22667479 tgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 22724118 - 22724181
Alignment:
Q  130 tgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataag 193  Q
    ||||||||||  ||| ||||||| |||| | |||||||||| ||||| ||||||||||||||||    
T  22724118 tgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 49845544 - 49845457
Alignment:
Q  120 cgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    |||||||||||||||||||| |||| | ||||  || | ||||||  |||||  |||  |||||||||||||||| ||||||||||||    
T  49845544 cgtcataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacagg 49845457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 43115089 - 43115126
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  43115089 ttatggaaataagctgaaaacaagttatggacatgtca 43115126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 47904039 - 47903998
Alignment:
Q  165 gcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||||||| |||||| ||||||||||| |||||||||||    
T  47904039 gcttatatcagaggataaactcaaataagtcaatccaaacag 47903998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 30277301 - 30277261
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  30277301 ataagctatcctagagagtttatggaaataagctgaaaaca 30277261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 8062343 - 8062397
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgt 115  Q
    |||||||||| ||| ||| ||||||||||||||||||||||  ||||||||||||    
T  8062343 ataagctatcttagagagattatggaaataagctgaaaacatcttatggacacgt 8062397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 11795125 - 11795162
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  11795125 ttatggaaataagctgaaaacaggttatggacatgtca 11795162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 32976480 - 32976525
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||    
T  32976480 aagtgcttatgtcagtagataagctcaaataagggaatccaaacag 32976525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 11188211 - 11188155
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||| |||||||||| ||||| ||||||||| ||||| |||| ||||    
T  11188211 ataagctatcctagagagtttatggtaataaactgaaaacaagttatagacatgtca 11188155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 14949880 - 14949936
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||  ||| |||| |||||||||||||||||| ||||||||| ||||    
T  14949880 ataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtca 14949936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 2458622 - 2458575
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatg 108  Q
    |||||||||||||| ||| |||||||||||| |||||||||| |||||    
T  2458622 ataagctatcctagagagcttatggaaataaactgaaaacagcttatg 2458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 10062198 - 10062151
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttat 107  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| ||||    
T  10062198 tataagctatccttgtgagtttatgcaaataagctgaaaacagcttat 10062151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 31705099 - 31705146
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||||| |||| | ||||||||||||||||||||||||||| |||||    
T  31705099 ataagctgtccttgagagtttatggaaataagctgaaaacagcttatg 31705146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 3254238 - 3254295
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||  |||| ||| |||||||||||||||||| ||||| ||| ||||    
T  3254238 tataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtca 3254295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 11059699 - 11059646
Alignment:
Q  154 gtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||||||||||||| ||| | |||||||||| |||||| ||| ||||||||    
T  11059699 gtcttataagtgcttatgtcattagataagctcacataagtcaattcaaacagg 11059646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 20672763 - 20672820
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||| | ||| ||||| ||||||||||||||||| ||||| ||| ||||    
T  20672763 tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtca 20672820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 25869307 - 25869266
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||||||||||  ||||||||| ||||    
T  25869307 gagtttatggaaataagctgaaaacaacttatggacatgtca 25869266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 30191180 - 30191072
Alignment:
Q  78 gtttatggaaataagctgaaaacaggttatggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtg 177  Q
    |||||||||||||||||||||||| ||| || ||| ||||       ||||||||||||||| |||| | ||||| |||| | ||||||||||  || |     
T  30191180 gtttatggaaataagctgaaaacaagttttgaacatgtca-------taagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaata 30191088  T
Q  178 gataagctcaaataag 193  Q
    ||||| ||||||||||    
T  30191087 gataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 38602439 - 38602480
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||    
T  38602439 cttatgtcagtagataagctcaaataagtcaatccaaacagg 38602480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 4055672 - 4055616
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||  || ||| ||| ||||||||||||||||||| ||||||||| ||||    
T  4055672 ataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtca 4055616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 28769380 - 28769344
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||||||||||||||  |||||||||    
T  28769380 gagtttatggaaataagctgaaaacaacttatggaca 28769344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 1710737 - 1710793
Alignment:
Q  54 ttttcatataagctatcctagggagtttatggaaataagctgaaaacaggttatgga 110  Q
    |||| ||||||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  1710737 tttttatataagctattctagagaggttatggaaataagctgaaaacagtttatgga 1710793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 39539844 - 39539781
Alignment:
Q  54 ttttcatataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||| ||||| || |  ||||||||||||||||| ||||||||| ||||    
T  39539844 ttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtca 39539781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 27496448 - 27496407
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  27496448 gagtttatggaaataagctgaaaacagcttatggacatgtca 27496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 27503106 - 27503065
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  27503106 gagtttatggaaataagctgaaaacagcttatggacatgtca 27503065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 33894642 - 33894778
Alignment:
Q  62 taagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttata 161  Q
    ||||||||||| |  ||||||| |||||||||||||||||  ||||||||| ||||       || | ||||| |||| |||| | ||||| |||| | |    
T  33894642 taagctatcctggaaagtttattgaaataagctgaaaacaacttatggacatgtca-------tatgctgttttcataagctctcacaaacagtctcaca 33894734  T
Q  162 agtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||||| ||| | ||||||||||||||||  ||||||||||    
T  33894735 agtgcttatgtcatttgataagctcaaataagctaatccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 24363657 - 24363601
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||| | ||| ||||||||||||||||||||||  ||||||||| ||||    
T  24363657 ataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 48157157 - 48157050
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtgga 179  Q
    ||||||||||||||||||||||| |||||||||        | ||||||||||||| ||| |||| | ||||| |||| | || |||||| ||||||  |    
T  48157157 ttatggaaataagctgaaaacagcttatggaca-------tggcataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaa 48157065  T
Q  180 taagctcaaataagt 194  Q
    |||||||||||||||    
T  48157064 taagctcaaataagt 48157050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 1418495 - 1418570
Alignment:
Q  130 tgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||| ||| |||| | ||||| | || ||||||||||||  |||| ||||||||||||||||| ||||||||||    
T  1418495 tgtttctataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 8427079 - 8427162
Alignment:
Q  120 cgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaa 203  Q
    |||| ||||||||||||||| |||| | ||||| |||| | |||| ||||| | ||| ||||||||||||||| | ||||||||    
T  8427079 cgtcgtaagttgtttccataggctcccccaaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaa 8427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 40428569 - 40428615
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttat 107  Q
    |||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  40428569 ataagctatcctaaagagcttatggaaataagctgaaaacagtttat 40428615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 9210933 - 9210970
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaa 203  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9210933 cttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 12234942 - 12234889
Alignment:
Q  64 agctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||| |||||| ||| ||||||||||||||||||||||| |||| |||| ||||    
T  12234942 agctttcctagagagcttatggaaataagctgaaaacagcttatagacatgtca 12234889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 27517897 - 27517856
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||||||||||||||||||||| | ||||||||| ||||    
T  27517897 gagtttatggaaataagctgaaaactgcttatggacatgtca 27517856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 44808191 - 44808228
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  44808191 ttatgaaaataagctgaaaacaggttatggacatgtca 44808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 23214922 - 23215006
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||||||||| ||||   || ||||||| |||| ||||||| ||||   ||| |||||| |||||||||| ||||||||||    
T  23214922 gtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 31341202 - 31341286
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||| |||||||||||||  ||| | ||||| |||||| ||||| ||||   ||| || |||||||||||||| ||||||||||    
T  31341202 gtcattagttgtttccataaactctcccaaacagtcttaaaagtgtttatgcaagtagaaaagctcaaataagtcaatccaaaca 31341286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 37064426 - 37064386
Alignment:
Q  166 cttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||||||| |||||| |||||||||| |||||||||||    
T  37064426 cttatatcagtagataagatcaaataagtcaatccaaacag 37064386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 39280974 - 39281034
Alignment:
Q  52 tattttcatataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||||||| | | ||   |||||||||||||||||||||  |||||||||    
T  39280974 tattttcatataagctatcttggagaacatatggaaataagctgaaaacaacttatggaca 39281034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 23373316 - 23373230
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||||||||||| ||| |||| | |||||  ||| | |||||||||||||||| || ||| |||||||||| ||| ||||||||    
T  23373316 gtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaacagg 23373230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 6292599 - 6292643
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||    
T  6292599 aagtgcttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 24146345 - 24146297
Alignment:
Q  52 tattttcatataagctatcctagggagtttatggaaataagctgaaaac 100  Q
    |||||||||||| |||||||| | ||||||||||||||||||| |||||    
T  24146345 tattttcatatacgctatccttgagagtttatggaaataagctaaaaac 24146297  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 6279413 - 6279464
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||||||| ||| ||||||||||| ||||||||||  |||||||||    
T  6279413 ataagctatcctagagagcttatggaaatacgctgaaaacaacttatggaca 6279464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 10439705 - 10439756
Alignment:
Q  66 ctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||| | ||||||||||||||||||||||| ||| ||||||||| ||||    
T  10439705 ctatcctggagagtttatggaaataagctgaaagcagattatggacatgtca 10439756  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 24460380 - 24460318
Alignment:
Q  145 actcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    |||||||| |||| | ||||||| || ||||| |||||| |||||||||| ||||||||||||    
T  24460380 actcaaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaacagg 24460318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 601048 - 601093
Alignment:
Q  54 ttttcatataagctatcctagggagtttatggaaataagctgaaaa 99  Q
    |||||||||| |||||||| | ||||||||| ||||||||||||||    
T  601048 ttttcatatatgctatcctggagagtttatgaaaataagctgaaaa 601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 4768867 - 4768834
Alignment:
Q  79 tttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||||||||||| ||||||||||    
T  4768867 tttatggaaataagctgaaaacaagttatggaca 4768834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 12564462 - 12564417
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||||||||||||  |||||||||||||||| ||| |||||||    
T  12564462 aagtgcttatatcagtatataagctcaaataagtcaattcaaacag 12564417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 36151554 - 36151505
Alignment:
Q  68 atcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||    
T  36151554 atcctagtgagcttatgaaaataagttgaaaacaggttatggacatgtca 36151505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 12477343 - 12477287
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||| | | |||| |||||||||||||||||||||  ||||||||| ||||    
T  12477343 ataagctatcatggagagtgtatggaaataagctgaaaacaacttatggacatgtca 12477287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 25479595 - 25479635
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    |||||||||||||| ||| ||||| ||||||||||||||||    
T  25479595 ataagctatcctagagagcttatgaaaataagctgaaaaca 25479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 26679421 - 26679505
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    |||||||| | |||||||| |||| | ||||| ||||||  |||||| ||  |||| ||||||||||||||| | ||||||||||    
T  26679421 gtcataagatttttccataagctctcgcaaactgtcttaccagtgctaatgacagtagataagctcaaataaatcaatccaaaca 26679505  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 35925704 - 35925760
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||| | | ||||||||||||||||| ||||||||| ||||| ||| ||||    
T  35925704 ataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtca 35925760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 47020521 - 47020577
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||| ||| ||| ||| ||||||||| || |||||||||||||||| ||||    
T  47020521 ataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtca 47020577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 29590670 - 29590560
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatggacacgtcagtcgtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcag 175  Q
    ||||||||||||||||| ||||||||  ||||||||| ||||       |||||| | |||||| ||| |||||||| |||| ||| |||||||| || |    
T  29590670 gagtttatggaaataagttgaaaacaacttatggacaagtca-------taagttttgtccataagctaactcaaacagtctcata-gtgcttatgtctg 29590579  T
Q  176 tggataagctcaaataagt 194  Q
    | |||||||||||||||||    
T  29590578 tagataagctcaaataagt 29590560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 40205130 - 40205079
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggaca 112  Q
    |||||||||||| | ||| |||| |||||||||||||||||| |||||||||    
T  40205130 ataagctatcctggagagcttatagaaataagctgaaaacagattatggaca 40205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 2468444 - 2468501
Alignment:
Q  60 tataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||||||||   |||||||||||| |||||| ||||||| ||||||||| ||||    
T  2468444 tataagctatcctgaagagtttatggaagtaagctcaaaacagcttatggacatgtca 2468501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 11297195 - 11297114
Alignment:
Q  125 taagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    ||||||||||||||| ||||  |||||| |||||| ||||| ||||  || | |||||||| |||||||| ||| |||||||    
T  11297195 taagttgtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataagtcaattcaaacag 11297114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 32194055 - 32194006
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacagggcc 210  Q
    |||| ||||||||| | | ||||||||||||||| |||||||||||||||    
T  32194055 aagttcttatatcattagttaagctcaaataagtcaatccaaacagggcc 32194006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 35036943 - 35036899
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||    
T  35036943 aagtgcttatatcagtagataagctcaaataact-aatccaaacag 35036899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 3280701 - 3280653
Alignment:
Q  159 ataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    ||||||||||| |||||| |||||| | |||||||| ||||||||||||    
T  3280701 ataagtgcttaaatcagtagataagtttaaataagtcaatccaaacagg 3280653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 14331474 - 14331518
Alignment:
Q  162 agtgcttatatcagtggataagctcaaataagtgaatccaaacag 206  Q
    |||||||||  |||| ||||||||||||||||| |||||||||||    
T  14331474 agtgcttatgacagtagataagctcaaataagtcaatccaaacag 14331518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 15074786 - 15074754
Alignment:
Q  80 ttatggaaataagctgaaaacaggttatggaca 112  Q
    ||||||||||||||||||||||| |||||||||    
T  15074786 ttatggaaataagctgaaaacagcttatggaca 15074754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 16889749 - 16889789
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    ||||||||| |||| |||||||||||||||| |||||||||    
T  16889749 ataagctatgctagagagtttatggaaataatctgaaaaca 16889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 28413325 - 28413293
Alignment:
Q  76 gagtttatggaaataagctgaaaacaggttatg 108  Q
    ||||||||||||||||||||||||||| |||||    
T  28413325 gagtttatggaaataagctgaaaacagcttatg 28413293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 36638761 - 36638817
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    ||||| |||||||| ||| |||||||||||||||||||| || ||||| ||| ||||    
T  36638761 ataagttatcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtca 36638817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 38104913 - 38104873
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaaca 101  Q
    |||||||||| ||| ||| ||||||||||||||||||||||    
T  38104913 ataagctatcttagagagcttatggaaataagctgaaaaca 38104873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 42034165 - 42034213
Alignment:
Q  159 ataagtgcttatatcagtggataagctcaaataagtgaatccaaacagg 207  Q
    |||||||||||| ||||| | ||||||||||||||  ||||||||||||    
T  42034165 ataagtgcttatgtcagtaggtaagctcaaataagctaatccaaacagg 42034213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 27017 - 27071
Alignment:
Q  63 aagctatcctagggagtttatggaaataagctgaaaacaggttatggacacgtca 117  Q
    |||||||| ||| ||| ||||||||||||||||||||||| ||||| ||| ||||    
T  27017 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtca 27071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 6613 - 6697
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||| |||||| ||||  ||| ||||||| |||| | ||||| ||||| || |  |||||||||||||||| ||||||||||    
T  6613 gtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaaca 6697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 6611 - 6695
Alignment:
Q  121 gtcataagttgtttccatatgctcactcaaacggtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 205  Q
    ||||||| |||||| ||||  ||| ||||||| |||| | ||||| ||||| || |  |||||||||||||||| ||||||||||    
T  6611 gtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaaca 6695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 159936 - 159884
Alignment:
Q  161 aagtgcttatatcagtggataagctcaaataagtgaatccaaacagggcccaa 213  Q
    ||||| |||||| ||| ||||||||||||||||  |||||||||||| |||||    
T  159936 aagtgtttatattagtagataagctcaaataagccaatccaaacaggccccaa 159884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 306340 - 306388
Alignment:
Q  61 ataagctatcctagggagtttatggaaataagctgaaaacaggttatgg 109  Q
    |||||||||||||| ||| ||||| || |||||||||||||| ||||||    
T  306340 ataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgg 306388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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