View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0594_low_47 (Length: 254)
Name: NF0594_low_47
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_47 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 4598769 - 4599014
Alignment:
| Q |
12 |
agagagagaaaataatttagtagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatcc |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4598769 |
agagagagaaaataatttaatagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatcc |
4598868 |
T |
|
| Q |
112 |
atgagtgcctcttcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttc---nnnnnnnnnnnttattagaca |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4598869 |
atgagcgcctcttcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagaca |
4598968 |
T |
|
| Q |
209 |
attgatttgattaggaaagaaccaaaaaatattaaatggttgatat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598969 |
attgatttgattaggaaagaaccaaaaaatattaaatggttgatat |
4599014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
| Q |
42 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
141 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
4623302 |
agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga |
4623401 |
T |
|
| Q |
142 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
187 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4623402 |
tcattgacttcattcatacctatgatttaaatttattagaattttc |
4623447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
| Q |
53 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
152 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||||| || || ||||| ||||| || |||| ||||||| ||| |
|
|
| T |
25016030 |
tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc |
25016129 |
T |
|
| Q |
153 |
gttcataccta |
163 |
Q |
| |
|
|| |||||||| |
|
|
| T |
25016130 |
gtccataccta |
25016140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
| Q |
53 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
152 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| |||||| ||| |
|
|
| T |
25037313 |
tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc |
25037412 |
T |
|
| Q |
153 |
gttcataccta |
163 |
Q |
| |
|
|| |||||||| |
|
|
| T |
25037413 |
gtccataccta |
25037423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
| Q |
69 |
ataatatagatgacgataatagtaatcaattctgttagtatc |
110 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
25002311 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
25002270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
| Q |
42 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
141 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| | |
|
|
| T |
18805701 |
agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga |
18805602 |
T |
|
| Q |
142 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
187 |
Q |
| |
|
|||| || ||| || | ||||||||||||||||||||||| ||||| |
|
|
| T |
18805601 |
tcatcgtactcatttaaacctatgatttaaatttattagagttttc |
18805556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1352 times since January 2019
Visitors: 3844