View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_48 (Length: 250)

Name: NF0594_low_48
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_48
NF0594_low_48
[»] chr6 (26 HSPs)
chr6 (9-250)||(7119035-7119276)
chr6 (9-250)||(7131513-7131754)
chr6 (48-250)||(6402777-6402979)
chr6 (48-250)||(6585217-6585419)
chr6 (48-243)||(6432078-6432273)
chr6 (54-243)||(6415889-6416078)
chr6 (48-228)||(6603204-6603384)
chr6 (48-250)||(6594586-6594788)
chr6 (54-247)||(10579719-10579913)
chr6 (48-243)||(6423134-6423329)
chr6 (48-250)||(6394781-6394983)
chr6 (58-247)||(7994165-7994354)
chr6 (54-250)||(19632362-19632558)
chr6 (56-243)||(6589310-6589497)
chr6 (55-250)||(14820617-14820812)
chr6 (57-243)||(6409932-6410118)
chr6 (55-236)||(14818306-14818487)
chr6 (137-250)||(6596908-6597021)
chr6 (54-242)||(6426434-6426622)
chr6 (126-234)||(14802331-14802439)
chr6 (54-228)||(6586112-6586284)
chr6 (114-231)||(9411338-9411455)
chr6 (161-248)||(8913966-8914054)
chr6 (48-250)||(11936255-11936457)
chr6 (48-250)||(11948235-11948437)
chr6 (138-228)||(28935056-28935146)
[»] chr3 (5 HSPs)
chr3 (48-250)||(51764420-51764622)
chr3 (55-243)||(13470719-13470907)
chr3 (57-250)||(51113761-51113954)
chr3 (48-250)||(51120873-51121075)
chr3 (56-170)||(514788-514902)
[»] chr1 (6 HSPs)
chr1 (48-250)||(19468479-19468681)
chr1 (54-208)||(9580992-9581148)
chr1 (55-208)||(9586563-9586716)
chr1 (58-197)||(7554415-7554554)
chr1 (138-234)||(43634914-43635010)
chr1 (136-205)||(52082586-52082655)
[»] chr7 (4 HSPs)
chr7 (48-243)||(10614510-10614705)
chr7 (48-242)||(15092139-15092333)
chr7 (49-166)||(10170145-10170262)
chr7 (49-166)||(10177670-10177787)
[»] chr4 (23 HSPs)
chr4 (54-250)||(53761752-53761945)
chr4 (59-205)||(640843-640989)
chr4 (57-243)||(546839-547025)
chr4 (60-243)||(1548410-1548594)
chr4 (54-250)||(55908708-55908904)
chr4 (138-249)||(532196-532307)
chr4 (54-250)||(55505088-55505281)
chr4 (126-240)||(1552757-1552871)
chr4 (54-206)||(553402-553554)
chr4 (49-248)||(570269-570468)
chr4 (48-230)||(1513407-1513586)
chr4 (48-231)||(1524485-1524665)
chr4 (49-205)||(7307778-7307934)
chr4 (105-229)||(8184031-8184155)
chr4 (54-169)||(370843-370958)
chr4 (48-175)||(558415-558542)
chr4 (54-229)||(12121458-12121633)
chr4 (58-240)||(1537757-1537939)
chr4 (148-229)||(1519143-1519224)
chr4 (185-243)||(21834365-21834423)
chr4 (160-200)||(1508033-1508073)
chr4 (48-108)||(6006244-6006304)
chr4 (126-206)||(8187115-8187195)
[»] chr5 (5 HSPs)
chr5 (48-246)||(20478066-20478264)
chr5 (71-250)||(41889534-41889713)
chr5 (48-215)||(41901550-41901717)
chr5 (58-228)||(32267402-32267572)
chr5 (59-132)||(17205527-17205600)
[»] chr2 (2 HSPs)
chr2 (54-203)||(45245112-45245261)
chr2 (54-249)||(1037645-1037840)
[»] chr8 (7 HSPs)
chr8 (54-249)||(18315254-18315449)
chr8 (48-228)||(27922425-27922605)
chr8 (115-205)||(17628039-17628129)
chr8 (49-231)||(21235476-21235658)
chr8 (121-242)||(32151291-32151412)
chr8 (49-229)||(34936164-34936344)
chr8 (54-166)||(44736458-44736570)
[»] scaffold0295 (1 HSPs)
scaffold0295 (54-250)||(604-800)
[»] scaffold0807 (1 HSPs)
scaffold0807 (54-228)||(1466-1643)
[»] scaffold0041 (1 HSPs)
scaffold0041 (48-203)||(39101-39256)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 7119035 - 7119276
Alignment:
Q  9 ataatactagcaaagaagacatccacgattcgagaagagtctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7119035 ataatactagcaaagaagacatccacgattcgagaagagtctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaa 7119134  T
Q  109 tctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7119135 tctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 7119234  T
Q  209 ggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  7119235 ggtgaacaacaaagttcattccaagtagcttcactcttgaac 7119276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 7131513 - 7131754
Alignment:
Q  9 ataatactagcaaagaagacatccacgattcgagaagagtctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7131513 ataatactagcaaagaagacatccacgattcgagaagagtctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaa 7131612  T
Q  109 tctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131613 tctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 7131712  T
Q  209 ggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  7131713 ggcgaacaacaaagttcattccaagtagcttcactcttgaac 7131754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 6402777 - 6402979
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| |||||| |||||||||  |||||||||| |||| || | |||||||| |||||||||| ||| |||||||| ||||||||| | |||||||||     
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| || || ||||||||  ||||||| ||||||||||||||||||||||    
T  6402877 gagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttg 6402976  T
Q  248 aac 250  Q
    |||    
T  6402977 aac 6402979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 6585419 - 6585217
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| |||||||||  ||||| |||||||||||| ||| |||| ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 6585320  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||| | |||||| ||||||||||||||||||||||    
T  6585319 gagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttg 6585220  T
Q  248 aac 250  Q
    |||    
T  6585219 aac 6585217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 6432078 - 6432273
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||||||||||||| |||||| ||||| |||||||||| |||| |||||||| || |||||  | ||| ||||||| || |||||| |||||||||||     
T  6432078 tctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattcttt 6432177  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
     |||||||||  |||||||||||||||||  | |||| ||||||||||||||||| ||||| ||||||  |||||||||||||| |||||||||||    
T  6432178 aagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcact 6432273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 6415889 - 6416078
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||| ||| ||||||||||||||||    | |||||||| || ||||  ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  6415889 ttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 6415988  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    |||| ||| |||| ||||| |||||| |||| ||||||||||||||||||||| | |||||| ||||||| ||||||| |||||||||||    
T  6415989 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcact 6416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 6603384 - 6603204
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||   |||| ||||     
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactcttt 6603285  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
    |||||| ||| || |||||||||||||||    ||||||| ||||| ||||||||  |||| |||||  ||||||||||||    
T  6603284 gagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcatt 6603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 6594788 - 6594586
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    |||||||||||||||||||||| ||||||||||  |||| | || ||||| || || ||||| ||  |||  |||||  |||||||| |||||||||||     
T  6594788 tctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattcttt 6594689  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    ||||||||| | ||||| |||||||||||||  |||| |||||||| |||||||||||| | |||||| | |||||| |||||| |||||||||||||||    
T  6594688 gagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttg 6594589  T
Q  248 aac 250  Q
    |||    
T  6594588 aac 6594586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 10579913 - 10579719
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaa-tagttccaaaagcccgcaacaattcttcgagat 152  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||    | ||| | ||||||||| ||||||||||||||  ||||||||||| |||||    
T  10579913 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgagat 10579814  T
Q  153 cacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    |  || |||||||| ||||||||| || |||| |||||||||||||||||||||||||||||  ||||  || |||| |||| ||||||||||||    
T  10579813 cgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttg 10579719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 6423134 - 6423329
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    |||||||||||||||||||  | ||||| |||||| |||||| ||||| ||||||| ||||||||  |||||||||| ||||| ||| |||||| ||||     
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    |||||| ||| |||||||| |||   |||  | |||| ||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||    
T  6423234 gagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcact 6423329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 6394781 - 6394983
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    |||||||||||||||||||||| ||||||||| ||| || || | ||||||||  | |||||  |  |||  || || ||||||||| |||||||||||     
T  6394781 tctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 6394880  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    |||||||||   || ||||||||||||||  | |||| ||||||||||||||||||||||| ||||||  |||||||||||||| |||| |||||| |||    
T  6394881 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttg 6394980  T
Q  248 aac 250  Q
    |||    
T  6394981 aac 6394983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 7994354 - 7994165
Alignment:
Q  58 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 157  Q
    |||||||||||| |||||||||||||||| | ||  || |||| || ||||  ||  |||||||||| |||||| ||  |||||||||| ||||||||||    
T  7994354 gtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacat 7994255  T
Q  158 ggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
      |||||||| |||| |||| | |||| ||||| |||||||||||| ||||  ||||| |||||||||||||| ||||||||||||||||    
T  7994254 atagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttg 7994165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 19632362 - 19632558
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||| ||||||||||| |||| ||||||||||| |||| ||||| || |  ||||| ||||||||| |||| ||||||||| ||||||||||| ||||||    
T  19632362 ttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatc 19632461  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    |||   |||   |||||||||||||| ||||  ||||||| ||||||||| |||| |||||| | |||||| ||||||||||| || ||| ||||||    
T  19632462 acaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaac 19632558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 6589497 - 6589310
Alignment:
Q  56 gtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 155  Q
    |||||||||||||| |||||||||||||||| | ||  |||||||||| ||||  ||  ||| ||| || || ||||||   |||||| || |||||||     
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag 6589398  T
Q  156 atggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    ||  ||||||| ||||| ||| || |||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  6589397 atatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcact 6589310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 250
Target Start/End: Original strand, 14820617 - 14820812
Alignment:
Q  55 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 154  Q
    ||||||||||||| | ||||||||||||| || |||| |||||||| || ||| | ||  ||||||| |  ||||||||| ||||||||||| |||||||    
T  14820617 tgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatca 14820716  T
Q  155 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
     ||  |||||||||| ||||||||| |||| ||| |||||||||||||| | || ||||||  ||||||| |||||| |||| ||||||| |||||    
T  14820717 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaac 14820812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 6409932 - 6410118
Alignment:
Q  57 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 156  Q
    |||||| |||| | |||||||||||||||| |||| |||||||| || ||| |  | ||  ||||||| ||||||||  ||||||||||| |||||||||    
T  6409932 tgtgcatttttttgccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcaca 6410031  T
Q  157 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    |  || ||||||||||||||  | |||| |||| |||||||||||| ||||| ||||||  |||||||||||||| |||||||||||    
T  6410032 taaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcact 6410118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 14818306 - 14818487
Alignment:
Q  55 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 154  Q
    ||||||||||||||| | ||||||||||| || |||| |||||||| || ||||| ||  ||||||| |  |||||||||  |||||||||| |||||||    
T  14818306 tgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatca 14818405  T
Q  155 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtag 236  Q
     ||  |||||||||| ||||||||| |||| ||| |||||||||||||| | || | ||||  ||||||| |||||| ||||    
T  14818406 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccatgtag 14818487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 6597021 - 6596908
Alignment:
Q  137 aacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtag 236  Q
    |||||||||| |||||  | | |||||||||||||||||| || |||  |||||||||||||||||||||||||||||   ||||||| ||| ||||| |    
T  6597021 aacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcg 6596922  T
Q  237 cttcactcttgaac 250  Q
    |||||| |||||||    
T  6596921 cttcacacttgaac 6596908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 6426434 - 6426622
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||| |||| |||||||| || ||| ||||||||   | ||||| ||  ||||||| || ||||| ||  ||||||||||| ||||||    
T  6426434 ttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattctttgagatc 6426533  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcac 242  Q
     |||  |  |||||||||||||   | || | |||||| |||||||||||||||| ||||||  |||||||||||||| |||| |||||    
T  6426534 gcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 6426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 14802331 - 14802439
Alignment:
Q  126 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttc 225  Q
    |||||| || ||||||||||| || ||||||| ||||||||||||||||||||| |||| |||||| |||||||| |||| || ||||||  |||||||     
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtta 14802430  T
Q  226 attccaagt 234  Q
     ||||||||    
T  14802431 gttccaagt 14802439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 6586284 - 6586112
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||| |||||||||   |||||| ||||||||||||||  |||||  ||| |||| || ||||| |||||||||||||||    |||| |||| ||||||    
T  6586284 ttgtttgcagttttgcaccacatctttcactcctttct--gtgacccaatcacaacctatcagtgatagttccaaaagcctaggacaaatctttgagatc 6586187  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
     ||  |||||||||||||| ||| |  || | |||||| | ||||||||| |||| |||||  ||||||||||||    
T  6586186 gcacagagtgtttcatcatgaacatctgtttttgacaaatccaacacctctagcttgggaagtacaaagttcatt 6586112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 9411338 - 9411455
Alignment:
Q  114 cagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 213  Q
    |||||| |||| |||||| || | ||||||||| |||||| ||| |||| |||||||   |||    |||| ||||||||||||||||||||||| ||||    
T  9411338 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttggga 9411437  T
Q  214 acaacaaagttcattcca 231  Q
    ||  ||||||||| ||||    
T  9411438 acctcaaagttcaatcca 9411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 8914054 - 8913966
Alignment:
Q  161 gtgtttcatcatcaaccttcgtatctgacaagttcaacacc-tccagctggggaacaacaaagttcattccaagtagcttcactcttga 248  Q
    ||||||||||||||| ||   ||| |||||| ||||||||  |||| || |||||| |||||||| ||| |||||||||||||||||||    
T  8914054 gtgtttcatcatcaaactctatatttgacaaattcaacacaatccaacttgggaactacaaagtttattgcaagtagcttcactcttga 8913966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 11936457 - 11936255
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||||||| |||||  |||||||  |||||||||| | |||||||   | ||||  ||| ||| | |||| ||||||||| | |||| ||||     
T  11936457 tctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactcttt 11936358  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    ||||||  || ||||| || ||| |||||  | |||  |||||||| |||||||||||| | ||||||  ||||||||| |  | ||||||||| |||||    
T  11936357 gagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttg 11936258  T
Q  248 aac 250  Q
    |||    
T  11936257 aac 11936255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 11948437 - 11948235
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||||||| |||||  |||||||  |||||||||| | |||||||   | ||||  ||| ||| | |||| ||||||||| | |||| ||||     
T  11948437 tctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactcttt 11948338  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    ||||||  || ||||| || ||| |||||  | |||  |||||||| |||||||||||| | ||||||  ||||||||| |  | ||||||||| |||||    
T  11948337 gagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttg 11948238  T
Q  248 aac 250  Q
    |||    
T  11948237 aac 11948235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 28935056 - 28935146
Alignment:
Q  138 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
    |||| |||| || ||||||  ||||| |||||| |||||  | |||| |||||||||||||||||| || ||||||||| |||| ||||||    
T  28935056 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 51764622 - 51764420
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    |||||||||||||||||||||  |||||||||||||||| ||||   |||||| || ||||| || ||||||||||| |||||||||||||||||||||     
T  51764622 tctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattcttt 51764523  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    |||||| ||| |||||||| ||||||||| || |||  ||||||||  |||||||||||||  |||||  ||||||||||||||||||||||||||||||    
T  51764522 gagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttg 51764423  T
Q  248 aac 250  Q
    |||    
T  51764422 aac 51764420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 13470907 - 13470719
Alignment:
Q  55 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 154  Q
    ||||||||||| ||| |||||||||||||||| |  | |||||||| || ||||  ||  |||||||||| ||||||||| ||||||||||| |||||||    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  155 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
     || |||||||| ||||| |||||| |||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  13470807 tatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcact 13470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 51113954 - 51113761
Alignment:
Q  57 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 156  Q
    |||||| |||||| ||||||| |||||||| |||| ||||||||  ||||||| ||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  51113954 tgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcaca 51113855  T
Q  157 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    | ||||||||||||||||||| | |||| ||||||||  ||||||||||| | |||| |  |||||||||||||||||||||||| | ||||||    
T  51113854 tagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaac 51113761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 51121075 - 51120873
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttc-agtaatagttccaaaagcccgcaacaattctt 146  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |||||||||  ||| | ||||| ||  | | || ||||||||| | |||| ||||    
T  51121075 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaac-agctttctagagacaattgcaaaagcccacgacaactctt 51120977  T
Q  147 cgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactctt 246  Q
     ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  |||||||||||||| | || |||||||||    
T  51120976 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactctt 51120877  T
Q  247 gaac 250  Q
    ||||    
T  51120876 gaac 51120873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 514902 - 514788
Alignment:
Q  56 gtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 155  Q
    ||||||||||||   ||||||| ||||||||  ||| ||||| |   | ||||| || ||||||||||| ||||||||| || ||| |||||||||||||    
T  514902 gtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcac 514803  T
Q  156 atggagtgtttcatc 170  Q
    ||| |||| ||||||    
T  514802 atgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 250
Target Start/End: Complemental strand, 19468681 - 19468479
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||| ||| ||||||| |||||||||||||||||||| |||||||| || |||| | | ||  |||| ||||||||| || ||||| |||||     
T  19468681 tctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttcttt 19468582  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttg 247  Q
    ||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||    
T  19468581 gagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttg 19468482  T
Q  248 aac 250  Q
    |||    
T  19468481 aac 19468479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 9580992 - 9581148
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||| |||||| ||||| | |||||||| || |||||||||  ||||| |||||||||||| ||   |||||| || | ||||||||| ||||||    
T  9580992 ttgtgtgcaattttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatc 9581091  T
Q  154 acatggagtgtttcatcatcaac--cttcgtatctgacaagttcaacacctccagct 208  Q
    ||||  || |||||||||| |||   || |||  |||||||||||||||||| ||||    
T  9581092 acataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagct 9581148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 9586563 - 9586716
Alignment:
Q  55 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 154  Q
    |||||||| |||||| ||||| | |||| ||| ||  ||||||||| |||||||| |||| |||| || | |||||| || | ||||||| | ||| |||    
T  9586563 tgtgtgcaattttctaccacacgcttcaatccattgcttgtgacatgataacaatttttctgtaaaagatgcaaaagtccacgacaattcattgaggtca 9586662  T
Q  155 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 208  Q
    |||  ||||||||||||| ||| |  |||| |||||||||||||||||| ||||    
T  9586663 cataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagct 9586716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 7554415 - 7554554
Alignment:
Q  58 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 157  Q
    |||||||||||| ||||||| |||||||| || | |||||||| || |||  |||||||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatat 7554514  T
Q  158 ggagtgtttcatcatcaaccttcgtatctgacaagttcaa 197  Q
     ||||| ||||||||||||  | |||| ||| ||||||||    
T  7554515 agagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 43634914 - 43635010
Alignment:
Q  138 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagt 234  Q
    ||||||||| ||| ||||||  |||||| |||| |||||||| |||| ||||||||||||| |||| |||||||| ||   |||| |||||||||||    
T  43634914 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagctgggggactctaaaggtcattccaagt 43635010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 52082586 - 52082655
Alignment:
Q  136 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 205  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  52082586 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 52082655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 10614510 - 10614705
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    |||||||||  ||||||||||| ||||||||||||||||||  | |||||||| || | ||  ||  |||||||||| ||||||||| | ||| ||||||    
T  10614510 tctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttc 10614609  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  10614610 gagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcact 10614705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 15092333 - 15092139
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||||||||||||||||||||  |||||||||||||||    | |||||||| |||||||  ||  |||||||||| ||||||||| |||||||||||     
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcac 242  Q
    |||||| ||| |||||||| ||||| |||||| || |||||||| |||||||||||||||| ||||||  |||||||||||||| |||| |||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 15092139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 10170262 - 10170145
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||  ||||  ||||||| |||||| || ||||||| ||| |    
T  10170262 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10170163  T
Q  149 agatcacatggagtgttt 166  Q
    ||||||||| ||||||||    
T  10170162 agatcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 10177787 - 10177670
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||  ||||  ||||||| |||||| || ||||||| ||| |    
T  10177787 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10177688  T
Q  149 agatcacatggagtgttt 166  Q
    ||||||||| ||||||||    
T  10177687 agatcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 53761945 - 53761752
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||||||||||||||||||||||||||| || |  ||||||| || ||||| ||||||||||| || ||||||||| | ||||||||||||||||    
T  53761945 ttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgagatc 53761847  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    |||  |||||||| ||| | ||| ||||||  ||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||||||||||||    
T  53761846 aca--gagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaac 53761752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 640843 - 640989
Alignment:
Q  59 tgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatg 158  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||| |||||||| |||||| || | |||||| || |  |||||||| ||| |||| |     
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  159 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 205  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 546839 - 547025
Alignment:
Q  57 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 156  Q
    |||||||||||||  ||||||||||||||| |||| |||||||| | |||| |||| |||||| | |||||||||||| |||||| |||| |||||||||    
T  546839 tgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcaca 546938  T
Q  157 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    | ||||||||||||||  ||  | |||  ||||||||||| ||||||||  |  |||||  ||||||||||||||| ||| ||||||    
T  546939 tagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcact 547025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 1548594 - 1548410
Alignment:
Q  60 gcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatgg 159  Q
    |||||||||||| | |||||||||||| |||| ||||| ||  | ||||  |||  |||| |  | ||||||||| |||||| |||| |||||||||| |    
T  1548594 gcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattg 1548495  T
Q  160 agtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattcc-aagtagcttcact 243  Q
    ||||||||||||||||   | |||| ||||||||||||||||||||| | |||||   ||||||||| ||| |||||||||||||    
T  1548494 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcact 1548410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 55908904 - 55908708
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||  | ||||||||||| || |||| |||||| | || ||||| || ||| || ||||  |||||||| ||||||||||| ||||||    
T  55908904 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 55908805  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    | || ||||||||||||||||||    |||| ||||||||| |||||||| |  |  |||||   |||||| |||| |||||| |||||||||||||    
T  55908804 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaac 55908708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 532196 - 532307
Alignment:
Q  138 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagc 237  Q
    ||||||||| ||| ||||||  ||  ||||||||||||  || |||| |||||||||||||||||| |||| ||| ||  |||||||||||||||||||     
T  532196 acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtaga 532295  T
Q  238 ttcactcttgaa 249  Q
    ||||||||||||    
T  532296 ttcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 55505281 - 55505088
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||||||||||  ||| ||||||||||| |||| ||||||||     | || ||||| ||| |  | |||||| || | ||||||||| ||| ||    
T  55505281 ttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtccacgacaattctttgaggtc 55505185  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    ||||  |||||| |||| |||||||| |||| |||||||||||||||||| || ||||| ||   |||||||||||||| ||| |||||| ||||||    
T  55505184 acataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattccaattaggttcactgttgaac 55505088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 1552871 - 1552757
Alignment:
Q  126 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttc 225  Q
    ||||||||| | ||||||||| || ||||||| |||||||||||||| ||  || |||| |||||| |||||||| ||||| | |||||   ||||||||    
T  1552871 caaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttc 1552772  T
Q  226 attccaagtagcttc 240  Q
    | |||||||||||||    
T  1552771 agtccaagtagcttc 1552757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 553402 - 553554
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||| ||||||| ||||||||||| | |||||||| |  |||||    ||  || |||| |||||||||  ||||| |||| || |||    
T  553402 ttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaactctttgaaatc 553501  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 206  Q
    ||||  |||| ||||||||||||  | |||  |||||||||||||||||||||    
T  553502 acattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccag 553554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 248
Target Start/End: Original strand, 570269 - 570468
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||| |||||||||||||||| ||||||| ||||| ||| | || || |||||||||||||  |  ||||| |||| ||||||||||| |||| |||| |    
T  570269 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttg 570368  T
Q  149 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttga 248  Q
    | |||| || ||||  ||| | ||||||    |||| |||||||||||||||||| || | | ||||  ||||||||| |||| | || |||||| ||||    
T  570369 aaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttga 570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 1513586 - 1513407
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||||||| ||||||  |||| | ||||||||  ||| |||||||  ||| ||| |||||||||  |||| ||||||||| | ||||  |||     
T  1513586 tctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgaca--ata-caacctttcagtatgagttgcaaaagcccacgacaacacttt 1513490  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattcc 230  Q
    ||||| || | |||||||||||||||||| || |||  ||||||||||||||| || || | ||||||  |||||||||||||    
T  1513489 gagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 1524665 - 1524485
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||||||||||||||  |||||  ||||||||  ||| |||||||||| ||| |     || ||| |||| ||||||||| | |||| |||      
T  1524665 tctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacataacaactacg---caataacagttgcaaaagcccacgacaactctgt 1524569  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattcca 231  Q
    ||||||| || ||||||||||||||||||  | |||  |||||| |||||||||||||  | ||||||  ||||||||||||||    
T  1524568 gagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 7307778 - 7307934
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||| ||| |||||||||||| ||||||| |||| |||  || | ||||||  | ||||| ||| |||||| || | ||||||||  |||||| |||| |    
T  7307778 ctcagttgcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttg 7307877  T
Q  149 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 205  Q
    |||||| | | |||| |||||||||||| |  |||| |||||||||||| |||||||    
T  7307878 agatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctcca 7307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 8184155 - 8184031
Alignment:
Q  105 acaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcc 204  Q
    ||||| || |||||| |||||||||||||| |||||| |||| |||||  ||| ||||| |  |||||||||  | |||| ||||||||||||||||||     
T  8184155 acaattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctct 8184056  T
Q  205 agctggggaacaacaaagttcattc 229  Q
    || |  |||||  ||||||||||||    
T  8184055 agtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 370843 - 370958
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||||||||   ||||||| ||||||||  ||||||||| |   | ||||| || ||||||||||| ||||||||  |||||| |||| ||||||    
T  370843 ttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagatc 370942  T
Q  154 acatggagtgtttcat 169  Q
    ||||| |||| |||||    
T  370943 acatgaagtgcttcat 370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 558415 - 558542
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||||||||||||||||  |||||| ||||||||||| | ||| ||  ||  ||||  ||  ||  | |||||||||||||| | |||| ||||     
T  558415 tctcatttgtgtgcagttttctagcacatgcttcactcctttatctgtaacgcaaatacaaaattgaagatacagttccaaaagcccacgacaactcttt 558514  T
Q  148 gagatcacatggagtgtttcatcatcaa 175  Q
    |||||||||||||||| |||||||||||    
T  558515 gagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 12121633 - 12121458
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||| |||||| ||||||| ||||||||  ||| ||||||| || | ||   || |||| | |||| ||||||||| |  |||  ||| |||||     
T  12121633 ttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagatt 12121534  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattc 229  Q
    ||   |||||||||||||||||| || |||| ||||||||||||||| || || | ||||||  ||||||||||||    
T  12121533 acggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 1537939 - 1537757
Alignment:
Q  58 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 157  Q
    ||||| ||||||  |||||  |||||||| |||| |||||||  |||||||  || |||||| |||| ||||||||| | ||||  ||| ||||| |||     
T  1537939 gtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacactttgagattacac 1537840  T
Q  158 ggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttc 240  Q
      |||||||  |||| ||| || |||| ||||||||||||||| || || | ||||||  |||||||||||||| | ||||||    
T  1537839 acagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 1519224 - 1519143
Alignment:
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattc 229  Q
    |||||||||| ||||| ||  ||||||||| | |||| |||||||||||||||||| || | ||||||  ||||||||||||    
T  1519224 gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 21834423 - 21834365
Alignment:
Q  185 ctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcact 243  Q
    ||||||||| |||||||||||||| |||||| |||||||| || | | |||||||||||    
T  21834423 ctgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcact 21834365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 1508073 - 1508033
Alignment:
Q  160 agtgtttcatcatcaaccttcgtatctgacaagttcaacac 200  Q
    ||||||||||||||||| || |||| |||||||||||||||    
T  1508073 agtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 6006244 - 6006304
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaa 108  Q
    |||||||||| ||||||||||| | || ||  ||||||| ||||||||||||| |||||||    
T  6006244 tctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaa 6006304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 8187195 - 8187115
Alignment:
Q  126 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 206  Q
    ||||||||| |||||| |||| || ||  |||  ||||||| |||||||||  | |||| |||||||||||||||||||||    
T  8187195 caaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccag 8187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 20478264 - 20478066
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| |||||||||||||||| | ||||||||| |||||||| ||||||||| ||  |||| |||||||| || || ||||||||| ||||||||| |     
T  20478264 tctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattcctt 20478165  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactctt 246  Q
    |||||||||   | |||||| |||||||| || |||| |||||||||||||||||||||||||||||  |||| ||| ||||||||||||||| |||||    
T  20478164 gagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctctt 20478066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 250
Target Start/End: Complemental strand, 41889713 - 41889534
Alignment:
Q  71 ccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatc 170  Q
    ||||||| |||||||| ||||||||||||| |||||||| ||| ||||| | || | |||||||||||||| |||| ||||||  ||  |||||||||||    
T  41889713 ccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatc 41889614  T
Q  171 atcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    |||||| || |||| ||| ||||||||||||||||  | ||||||   |||||||||| |||||||||||||| ||||||    
T  41889613 atcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaac 41889534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 41901717 - 41901550
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||||||| || ||||||||| ||||||| |||||||| ||||||||||||| || ||||||||  ||| | | || |||||| || |||||| ||||     
T  41901717 tctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactcttt 41901618  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaac 215  Q
    ||||||| ||  |||| |||||||||||| || |||| ||||||||||||||||||||| | ||||||    
T  41901617 gagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaac 41901550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 32267402 - 32267572
Alignment:
Q  58 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 157  Q
    |||||||||||| | ||||| |||||||| |||||||||| || || ||||| ||| ||| | | || ||||||||| |||||| |||| ||||||| ||    
T  32267402 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatat 32267501  T
Q  158 ggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
      |||| ||||||||||||  | || | |||||||||||| |||||||  | ||||||  |||||||||||    
T  32267502 aaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 17205527 - 17205600
Alignment:
Q  59 tgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagc 132  Q
    ||||||||||| |||||||||||| |||||| | |||||||| || ||||| || ||||| ||| | |||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacatcattacaatgttccagtattagatgcaaaagc 17205600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 45245261 - 45245112
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    ||||||||| |||||| |||||||||||||||| || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| ||||||    
T  45245261 ttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 45245162  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 203  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||||    
T  45245161 acatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctc 45245112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 1037840 - 1037645
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||  | ||||||||||| || |||| |||||| | || ||||| || ||| || ||||  |||||||| ||||||||||| ||||||    
T  1037840 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 1037741  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaa 249  Q
    | || ||||||||||||||||||    |||| ||||||||| |||||||| |  |  |||||   |||||| |||| |||||| ||||||||||||    
T  1037740 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaa 1037645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 18315449 - 18315254
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||| ||||||  ||  ||||||||| |||||||| | ||||   || || ||| |||| ||||||||  | |||| |||| ||||||    
T  18315449 ttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatc 18315350  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaa 249  Q
    |||| ||||| |||||||||||| || |||| ||||||||||||||||||||| | ||||||   ||||||||||||| ||||||||| |||||||    
T  18315349 acatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaa 18315254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 27922425 - 27922605
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||| |||||||||||| ||||||| |||||||| |||||||||| || || ||||| ||  ||| | | || ||||||||| |||||| ||||     
T  27922425 tctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactcttt 27922524  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
    ||||||| ||  |||| |||||||||||| || |||| ||||||||||||||||||||  | ||||||  |||||||||||    
T  27922525 gagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 17628129 - 17628039
Alignment:
Q  115 agtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 205  Q
    |||||||||| ||| |||||  |||||||||| ||||||||| |||||| || |||||||||  | |||| ||||||||||||||||||||    
T  17628129 agtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 21235476 - 21235658
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||| |||||||||||||||| ||||||| ||||| ||| | || ||||||||||||||||  |  ||||| |||| |||||||| || |||  |||| |    
T  21235476 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagtaacagttgcaaaagcctgcgacagctctttg 21235575  T
Q  149 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattcca 231  Q
    | |||| || ||||  ||| | ||||||    |||| ||||||||||||||||||||| | ||||||  ||||||||| ||||    
T  21235576 aaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 32151291 - 32151412
Alignment:
Q  121 agttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaa 220  Q
    |||| ||||||||| | |||| |||| |||||||||| ||||||||||||||||| | | |||  ||||||||| ||||||||||| | || |||  | |    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcga 32151390  T
Q  221 agttcattccaagtagcttcac 242  Q
    ||||||||||| | ||||||||    
T  32151391 agttcattccacgcagcttcac 32151412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 34936344 - 34936164
Alignment:
Q  49 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 148  Q
    |||||||||||||| |||||  ||||| | |  ||||| ||||  ||||||| | |||||| ||  |||||||||| ||||||||| | |||| |||| |    
T  34936344 ctcaattgtgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttg 34936245  T
Q  149 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattc 229  Q
     |||  ||| |||||||| |||||||||  | |||| |||||||| ||||||||| || |  |||||| ||||| ||||||    
T  34936244 cgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattc 34936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 44736458 - 44736570
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||| || |||||| | |||||||||||||| ||| ||||||||| ||||||||   ||| ||  |||| ||||||||| |||||| |||| ||||||    
T  44736458 ttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaacaactctttgagatc 44736557  T
Q  154 acatggagtgttt 166  Q
    |||  ||||||||    
T  44736558 acaatgagtgttt 44736570  T

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Target: scaffold0295 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 800 - 604
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||||||||||||||| | ||||||||||| || |||| | |||| | || ||||| || |||||| ||||  || ||||| ||||||||||||||||||    
T  800 ttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatc 701  T
Q  154 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcattccaagtagcttcactcttgaac 250  Q
    | || ||||||||||||||| ||  | |||| ||||||||| |||||||| |  |  |||||   |||||| |||| |||||| |||||||||||||    
T  700 atatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaac 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 1643 - 1466
Alignment:
Q  54 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 153  Q
    |||| ||||||||||  | |||| |||||||||||||| | ||||  ||| ||||| | |||||  ||||||||||| |||  |||||||||| ||||||    
T  1643 ttgtttgcagttttccacgacatctttcactcctttctctatgacccaatcacaatttatcagtcttagttccaaaatccctgaacaattctttgagatc 1544  T
Q  154 acatggagtgtttcatc---atcaaccttcgtatctgacaagttcaacacctccagctggggaacaacaaagttcatt 228  Q
    |||| ||||||||||||   |||||| || |||| |||||||| ||||||||| ||||  ||||| ||||||||||||    
T  1543 acatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 39101 - 39256
Alignment:
Q  48 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 147  Q
    ||||| ||| |||||||| | | |||||||||||||||| ||| ||||||||  | |||| | || |||||  || | ||||||||| | |||| ||||     
T  39101 tctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaactcttt 39200  T
Q  148 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 203  Q
    ||||||||||  ||||||||||||| |||||| |||  || |||||||||||||||    
T  39201 gagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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