View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_49 (Length: 250)
Name: NF0594_low_49
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 2999111 - 2998977
Alignment:
| Q |
105 |
tttttattaactcaaatatatgttacaacttacaaataggagccaaattagttttaatcatttacatatccaaaatcacgataattgagtggatatgatc |
204 |
Q |
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| T |
2999111 |
tttttattaacttaaatatatgttacaacttacaaataggagccaaattagttttaatcatttacatatccaaaatcacgataattgagtggatatgatc |
2999012 |
T |
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| Q |
205 |
aacttatagaagtaaaactcaaaactacatttcat |
239 |
Q |
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| T |
2999011 |
aacttatagaagtaaaactcaaaactacatttcat |
2998977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 2999407 - 2999296
Alignment:
| Q |
2 |
ttaatcatatttactctaatactttatatgatgatctcatttttaaaaaacaattgatcttgaaaagnnnnnnnnnnnncagacatttgaaactcaaaat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
2999407 |
ttaatcatatttactctaatactttatatgatgatctcatttttaagaaacaattgatcttgcaaaaaaaaaaaaaaaacagacatttgaaactcaaaat |
2999308 |
T |
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| Q |
102 |
caatttttatta |
113 |
Q |
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|||||||||||| |
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| T |
2999307 |
caatttttatta |
2999296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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