View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0594_low_5 (Length: 615)
Name: NF0594_low_5
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0594_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 13 - 586
Target Start/End: Complemental strand, 8058257 - 8057684
Alignment:
| Q |
13 |
aatatatgtagagactagagtttgaattccggattctccaccgattcaccttaaagtgaaagttagtcactaaactacttgataaggaaaaaccacaaga |
112 |
Q |
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| T |
8058257 |
aatatatgtagagactaaagttcgaattccggattcttcactaattcaccttaaagtgaaatctagtcactaaactacttgataagaaaaaaccacaaga |
8058158 |
T |
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| Q |
113 |
atctaaatatatagacatgttccattacaagacctaaagaaaccacaaaccaacttaatagattaaaaagtgcaaccactgcttagcctttctctgatct |
212 |
Q |
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| T |
8058157 |
atctaaatatattgacatgttccattacaagacctaaagaaacctcaaaccaacttaatagattaaaaagtgcaaccactgcttagtctttctctgatct |
8058058 |
T |
|
| Q |
213 |
ggaatttgtcaaacatcaacgttctttcttcttcctctccccattttcaataacattcagcaaaactttggcaccgtgtttctcccacacaggttttcca |
312 |
Q |
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| T |
8058057 |
ggaatttgtcaaacatcaacgttctttcttcttcctctccccattttcaataacattcagcaaaactttggtaccgtgtttctcccacacagattttcca |
8057958 |
T |
|
| Q |
313 |
ttcatgtctttcatttgaagctcaagattattcacgtagaacccatcatctccacctttccgatggcacgcgaccttcaccttacacttcatcatctccg |
412 |
Q |
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| T |
8057957 |
ttcatgtctttcatttgaagctcaagattattcacgtagaacccatcatctccacctttccgatggcacgtgaccttcaccttacacttcaccatctccg |
8057858 |
T |
|
| Q |
413 |
tataatcctcagatagccccagcatcatggtctcgtacactaccttagtctctaaagaggctgaaacatgtttaactgaaacaggtttaacactagaaca |
512 |
Q |
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| T |
8057857 |
tataatcctcagatagccccggcatcatggtctcgtacactaccttagtctctaaagaggctgaaacatgttcaactgaaacaggtttaacactagaaca |
8057758 |
T |
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| Q |
513 |
aaacaagctccctgcacgcttttgatgagtctcgataaccacccaactcaacctcaaattttctttcaaatatt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8057757 |
aaacaagctccctgcacgcttttgatgagtctcgataaccacccaactcaacctcaaattttctttcaagtatt |
8057684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 7500304 - 7500346
Alignment:
| Q |
544 |
tcgataaccacccaactcaacctcaaattttctttcaaatatt |
586 |
Q |
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|||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
7500304 |
tcgataactacccaactcaacctcaaattttcatgcaaatatt |
7500346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 586
Target Start/End: Complemental strand, 27257881 - 27257797
Alignment:
| Q |
502 |
acactagaacaaaacaagctccctgcacgcttttgatgagtctcgataaccacccaactcaacctcaaattttctttcaaatatt |
586 |
Q |
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||||||||||||||||| | ||||||||||| || | |||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
27257881 |
acactagaacaaaacaactttgctgcacgctttcgagttggatcgataacaacccaactcaacctcaaattttcttgcaaatatt |
27257797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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