View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0594_low_50 (Length: 250)

Name: NF0594_low_50
Description: NF0594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0594_low_50
NF0594_low_50
[»] chr4 (4 HSPs)
chr4 (29-250)||(2999588-2999809)
chr4 (103-162)||(775980-776039)
chr4 (107-156)||(47266146-47266195)
chr4 (128-172)||(1144934-1144978)
[»] chr8 (1 HSPs)
chr8 (113-189)||(42932213-42932289)
[»] chr3 (1 HSPs)
chr3 (128-161)||(32632336-32632369)
[»] chr2 (1 HSPs)
chr2 (107-156)||(32957561-32957610)
[»] chr6 (2 HSPs)
chr6 (106-174)||(2105898-2105966)
chr6 (130-174)||(7338842-7338886)
[»] chr5 (1 HSPs)
chr5 (137-173)||(18431001-18431037)
[»] chr1 (1 HSPs)
chr1 (136-168)||(5573630-5573662)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 2999809 - 2999588
Alignment:
Q  29 ttaattacgttccaagagaaatttacaaagtcataatggtgagccatctcataatatgaatagtctaaacgcatatatgtcatcgtgagtttagtttgat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |    
T  2999809 ttaattacgttccaagagaaatttacaaagtcataatggtgagccatctcataatatgaatagtctaaacgcatatatgtcctcgtgagcttagttcggt 2999710  T
Q  129 tggtataaacaatgtataatatatgtaaaatttaaggttcaaactctgccatcaccaaaaaagtctaaacgcatatattagtattgtgggatgaggaaga 228  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||     
T  2999709 tggtataaacaatgtacaatatatgtaaaatttagagttcaaactcgaccaccaccaaaaaagtctaaacgcatatattagtattgtgggaggaggaagg 2999610  T
Q  229 atatattaataatttagagatc 250  Q
    ||||||||||||||||||||||    
T  2999609 atatattaataatttagagatc 2999588  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 776039 - 775980
Alignment:
Q  103 atatgtcatcgtgagtttagtttgattggtataaacaatgtataatatatgtaaaattta 162  Q
    |||||||||||||||||||||| | ||| || |||||| | |||||||||||||| ||||    
T  776039 atatgtcatcgtgagtttagttgggttgatagaaacaacgcataatatatgtaaagttta 775980  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 47266146 - 47266195
Alignment:
Q  107 gtcatcgtgagtttagtttgattggtataaacaatgtataatatatgtaa 156  Q
    |||||||||||||||| |   |||||||| ||||||||||||||||||||    
T  47266146 gtcatcgtgagtttagatcagttggtatagacaatgtataatatatgtaa 47266195  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 1144934 - 1144978
Alignment:
Q  128 ttggtataaacaatgtataatatatgtaaaatttaaggttcaaac 172  Q
    |||||| | ||||||||||||||||||||||||| | ||||||||    
T  1144934 ttggtagagacaatgtataatatatgtaaaatttgaagttcaaac 1144978  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 42932289 - 42932213
Alignment:
Q  113 gtgagtttagtttgattggtataaacaatgtataatatatgtaaaatttaaggttcaaactctgccatcaccaaaaa 189  Q
    ||||||||||||   |||||||||||||||||||||||||||||  ||| ||||||||| ||  ||| |||||||||    
T  42932289 gtgagtttagttcacttggtataaacaatgtataatatatgtaaggtttgaggttcaaattcaaccaccaccaaaaa 42932213  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 32632336 - 32632369
Alignment:
Q  128 ttggtataaacaatgtataatatatgtaaaattt 161  Q
    ||||||||||||||| ||||||||||||||||||    
T  32632336 ttggtataaacaatgcataatatatgtaaaattt 32632369  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 32957610 - 32957561
Alignment:
Q  107 gtcatcgtgagtttagtttgattggtataaacaatgtataatatatgtaa 156  Q
    |||||||||||||||| | | ||||||| ||||||| |||||||||||||    
T  32957610 gtcatcgtgagtttagctcggttggtatgaacaatgcataatatatgtaa 32957561  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 2105898 - 2105966
Alignment:
Q  106 tgtcatcgtgagtttagtttgattggtataaacaatgtataatatatgtaaaatttaaggttcaaactc 174  Q
    |||| |||||||||||| | | |||||| |||||||| |||||||||||||  ||  ||||||||||||    
T  2105898 tgtcctcgtgagtttagctcggttggtaaaaacaatgcataatatatgtaaggttcgaggttcaaactc 2105966  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 7338886 - 7338842
Alignment:
Q  130 ggtataaacaatgtataatatatgtaaaatttaaggttcaaactc 174  Q
    |||||| ||||| ||||||||||||||  ||||||||||||||||    
T  7338886 ggtatatacaatatataatatatgtaaggtttaaggttcaaactc 7338842  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 18431037 - 18431001
Alignment:
Q  137 acaatgtataatatatgtaaaatttaaggttcaaact 173  Q
    |||||||||||||||||||||||  ||||||||||||    
T  18431037 acaatgtataatatatgtaaaatccaaggttcaaact 18431001  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 5573630 - 5573662
Alignment:
Q  136 aacaatgtataatatatgtaaaatttaaggttc 168  Q
    ||||||||||||||||||||||||||| |||||    
T  5573630 aacaatgtataatatatgtaaaatttagggttc 5573662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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