View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0595_low_1 (Length: 718)
Name: NF0595_low_1
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0595_low_1 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 59 - 645
Target Start/End: Original strand, 7209818 - 7210404
Alignment:
| Q |
59 |
agcattttttgtcccctaaaagtgcaaaggaaaatgctacaagactaaaagtgcaacttattttatagggactaaaaacgaacttatgcatatttttgta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7209818 |
agcattttttgtcccctaaaagtgcaaaggaaaatgctacaggattaaaagtgcaacttattttatagggactaaaaacgaacttatgcatatttttgta |
7209917 |
T |
|
| Q |
159 |
gggaccatttacttgattaacccttttcaggaaaatcaggtaatcaattaataataaaatctctcttttcttattttttaattctactctatagtttcat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7209918 |
gggaccatttacttgattaacccttttcaggaaaatcaggtaatcaattaataataaaatctctcttttcttattttttaattctactctatagtttcat |
7210017 |
T |
|
| Q |
259 |
aagatctttccataaatcagcttttatatattactgcagttaatttggataagttaatgtgttggatttgaatgctgctgcaattgattcagtgatcatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7210018 |
aagatctttccataaatcagcttttatctattactgcagttaatttggattagttactgtgttggacttggatgctgctgcaattgattcagtgatcatg |
7210117 |
T |
|
| Q |
359 |
agactctaccttgcattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaa |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7210118 |
agactctaccttgcattgtttttctttttgacctctcttcaagttactcttagtaaagatattgaacatggtttgctactagtaaatggagctcaagcaa |
7210217 |
T |
|
| Q |
459 |
aagctgaaacaggtgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7210218 |
aagctgaaacaggtgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctattgttcttggggacactcatctattgt |
7210317 |
T |
|
| Q |
559 |
aaatttggtgagtattctgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgatgatgt |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7210318 |
aaatttggtgagtattctgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgctgatgt |
7210404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 238 - 574
Target Start/End: Original strand, 7196330 - 7196670
Alignment:
| Q |
238 |
aattctactctatagtttcataagatctttccataaatcagcttttatatattactgcagttaatttggataagttaatg-------tgttggatttgaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| || ||||||| ||| | |
|
|
| T |
7196330 |
aattctactctatagtttcataagatctttctataaatcagcttttatctattactgcagttaatttggattagttactgactactgtgttggacttgga |
7196429 |
T |
|
| Q |
331 |
tgctgctgcaattgattcagtgatcatgagactctaccttgcattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggt |
430 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7196430 |
tgctgctgcaattcattcagtcatcatgagactctaccttgcattgtttttctttttggcctctcttcaagttactctaagtaaagatattgaacatggt |
7196529 |
T |
|
| Q |
431 |
ttgctactagtaaatggagctcaagcaaaagctgaaacaggtgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggct |
530 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||| || |||||||| |||| |
|
|
| T |
7196530 |
ttgctactagtaaatggagctaaagcaaaagctgaaacaggtgataacttcatttgcgcaacgattgattggtggcctcctg---aatgcaacttcggcg |
7196626 |
T |
|
| Q |
531 |
attgttcttggggacactcatctattgtaaatttggtgagtatt |
574 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
7196627 |
tttgttcttggggacattcgtctattgtaaatttggtgtgtatt |
7196670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 234 - 574
Target Start/End: Original strand, 7203623 - 7203963
Alignment:
| Q |
234 |
ttttaattctactctatagtttcataagatctttccataaatcagcttttatatattactgcagttaatttggataagttaatgtgttggatttgaatgc |
333 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||| ||| |||| |
|
|
| T |
7203623 |
ttttaattctactctatagtttcgtcacatctttctataaatcaacttttatctattactgcagttaatttggattagttactgtgttggacttggatgc |
7203722 |
T |
|
| Q |
334 |
tgctgcaattgattcagtgatcatgagactctaccttgcattgtttttctttttgacctctcttcaagttactctaagtaaagatattgaacatggtttg |
433 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7203723 |
tgctgcaattgattcagtcatcatgagactctcccttgcattgttcatctttttggcctctcttcaagttactctaagtaaagatgttgaacatggtttg |
7203822 |
T |
|
| Q |
434 |
ctactagtaaatggagctcaagcaaaagctgaaacaggtgataacttcatttgtgccactattgattggtggcctcatgataaatgcaacgacggctatt |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||||||||| ||| ||||||| |||| || |
|
|
| T |
7203823 |
atactagtaaatggagctcaagcaaaagctgaaataggtgataacttcatttgcgcaacgattgattggtggcctcctgaattatgcaacttcggcgttt |
7203922 |
T |
|
| Q |
534 |
gttcttggggacactcatctattgtaaatttggtgagtatt |
574 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
7203923 |
gttcttggggacattcatctattgtcaatttggtgtgtatt |
7203963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7209736 - 7209808
Alignment:
| Q |
1 |
tttgtagtactctaaaattgttcagaaacatttttagtccctctaaaaaatttctgtcagcattttttgtccc |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
7209736 |
tttgtagtactctaaaattgttcagaaacatttttaatccctctaaaaaatttctgttagcatttttggtccc |
7209808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 45387644 - 45387740
Alignment:
| Q |
414 |
aagatattgaacatggtttgctactagtaaatggagctcaagcaaaagctgaaacaggtgataacttcatttgtgccactattgattggtggcctca |
510 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| ||||| || ||||||| | ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
45387644 |
aagatattgaacatggttccatcgaagtaaacggagttcaaggaattgctgaaaatgatgataacttcatttgcgctactattgattggtggcctca |
45387740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 16359 - 16295
Alignment:
| Q |
116 |
ttattttatagggactaaaaacgaacttatgcatatttttgtagggaccatttacttgattaaccct |
182 |
Q |
| |
|
|||||||||||||||||||||| || || || |||||| | ||||||||||||||| ||||||||| |
|
|
| T |
16359 |
ttattttatagggactaaaaacaaaattctgaatatttat--agggaccatttacttaattaaccct |
16295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 4718200 - 4718264
Alignment:
| Q |
116 |
ttattttatagggactaaaaacgaacttatgcatatttttgtagggaccatttacttgattaaccct |
182 |
Q |
| |
|
||||||| |||||||||||||| || ||||| ||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
4718200 |
ttattttgtagggactaaaaacaaaattatgaata--tttatagggaccatttacttaattaaccct |
4718264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 625
Target Start/End: Original strand, 8160373 - 8160419
Alignment:
| Q |
579 |
tctatgaagcacggattctaacacggacacctaacacgacactgaca |
625 |
Q |
| |
|
||||||| |||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
8160373 |
tctatgatgcacggatactgacacggacaccgaacacgacactgaca |
8160419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 29368938 - 29368987
Alignment:
| Q |
29 |
catttttagtccctctaaaaaatttctgtcagcattttttgtcccctaaa |
78 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
29368938 |
catttttagtccctataaaaaatttccatcaacattttttgtcccttaaa |
29368987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 41506536 - 41506602
Alignment:
| Q |
116 |
ttattttatagggactaaaaacgaacttatgcatatttttgtagggaccatttacttgattaacccttt |
184 |
Q |
| |
|
|||||||||||||||||||||| || || || ||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
41506536 |
ttattttatagggactaaaaacaaaattctgaata--tttatagggatcatttacttaattaacccttt |
41506602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 20224920 - 20224986
Alignment:
| Q |
116 |
ttattttatagggactaaaaacgaacttatgcatatttttgtagggaccatttacttgattaacccttt |
184 |
Q |
| |
|
||||||| |||||||||||||| || || || |||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
20224920 |
ttattttgtagggactaaaaacaaaattctgaatatttat--agggaccatttacttaattaacccttt |
20224986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University