View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0595_low_11 (Length: 309)

Name: NF0595_low_11
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0595_low_11
NF0595_low_11
[»] chr5 (1 HSPs)
chr5 (84-211)||(4134144-4134271)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 4134144 - 4134271
Alignment:
Q  84 agatgaataatgaaaagaggttagattagaggaatatgaagaagggtacctgagaattgatgctttgaaggtttgggtttgaattcatcaaaatccaaca 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4134144 agatgaataatgaaaagaggttagattagaggaatatgaagaagggtacctgagaattgatgctttgaaggtttgggtttgaattcatcaaaatccaaca 4134243  T
Q  184 aaagagttatacaagataatgttaaaag 211  Q
    ||||||||||||||||||||||||||||    
T  4134244 aaagagttatacaagataatgttaaaag 4134271  T

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