View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0595_low_15 (Length: 229)
Name: NF0595_low_15
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0595_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 41250473 - 41250255
Alignment:
| Q |
7 |
aacttgactttaaaaattaaatttttattgagtttaataaaataatttgaaactcataactcatatcacttaattttcaaaatacttacactcagaaatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41250473 |
aacttgactttaaaaattaaatttttattgagtttaataaaataatttgaaactcataactcatatcacttaattttcaaaatacttacactcagaaatt |
41250374 |
T |
|
| Q |
107 |
tatctccaaaaatttatctaaaacattttcccatattgaaaataataaaaacaatttaaatagtannnnnnnnncttaacttgaatttggctttaaatca |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41250373 |
tatctccaaaaatttatctaaaacattttccc--attgaaaataataaaaacaatttaaatagtatttgtttttcttaacttgaatttggctttaaatca |
41250276 |
T |
|
| Q |
207 |
tttacctaccttattctattg |
227 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41250275 |
tttacctaccttattctattg |
41250255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 2817789 - 2817586
Alignment:
| Q |
7 |
aacttgactttaaaaattaaatttttattgagtttaataaaataatttgaaactcataactcatatcacttaattttcaaaatacttacactcagaaatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2817789 |
aacttgactttaaaaattaattttttattgagtttaataaaataatttcaaactcataactcatatcacttaattttcaaaatacttacacttagaaatt |
2817690 |
T |
|
| Q |
107 |
tatctccaaaaatttatctaaaacattttcccatattgaaaataataaaaacaatttaaatagta-----nnnnnnnnncttaacttgaatttggcttta |
201 |
Q |
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| T |
2817689 |
t--------------atctaaaatattttccc--attgaaaataataaaaacaatttaaatagtatttgtttttttttttttaacttgaatttggcttta |
2817606 |
T |
|
| Q |
202 |
aatcatttacctaccttatt |
221 |
Q |
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|||||||||||||||||||| |
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| T |
2817605 |
aatcatttacctaccttatt |
2817586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 17087830 - 17087934
Alignment:
| Q |
7 |
aacttgactttaaaaattaaatttttattgagtttaataaaataatttgaaactcataactcatatcacttaattttcaaaatacttacactcagaaatt |
106 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17087830 |
aacttgactttaaaaattgattttttattgagtttaataaaataatttcaaactcataactcatatcacttaattttcaaaatacttgcactcagaaatt |
17087929 |
T |
|
| Q |
107 |
tatct |
111 |
Q |
| |
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||||| |
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|
| T |
17087930 |
tatct |
17087934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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