View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0595_low_16 (Length: 201)

Name: NF0595_low_16
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0595_low_16
NF0595_low_16
[»] chr8 (3 HSPs)
chr8 (1-83)||(30878565-30878647)
chr8 (1-67)||(30854384-30854448)
chr8 (100-131)||(30878523-30878554)
[»] chr6 (2 HSPs)
chr6 (1-67)||(15064233-15064297)
chr6 (1-30)||(15070955-15070984)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30878647 - 30878565
Alignment:
Q  1 catgcatggacaaattaagctagaatctctttagatatctagctctagtatatcaccataatatgtggctttttattcgtaac 83  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  30878647 catgcatggacaaattaagctagaatctctttagatagctagctctagtttatcaccataatatgtggctttttattcgtaac 30878565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30854448 - 30854384
Alignment:
Q  1 catgcatggacaaattaagctagaatctctttagatatctagctctagtatatcaccataatatgtg 67  Q
    ||||||||||||||||||||| ||||||  ||||| | |||||| |||| |||||||||||||||||    
T  30854448 catgcatggacaaattaagctggaatct--ttagacagctagctttagtctatcaccataatatgtg 30854384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 131
Target Start/End: Complemental strand, 30878554 - 30878523
Alignment:
Q  100 ccttcttttctgttttgaatttggttggttat 131  Q
    ||||||||||||||||||||||||||||||||    
T  30878554 ccttcttttctgttttgaatttggttggttat 30878523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15064233 - 15064297
Alignment:
Q  1 catgcatggacaaattaagctagaatctctttagatatctagctctagtatatcaccataatatgtg 67  Q
    |||||||||||||||||||||||||||||  |  | | |||||||||||||||| ||||||||||||    
T  15064233 catgcatggacaaattaagctagaatctc--tcaacaactagctctagtatatctccataatatgtg 15064297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 15070955 - 15070984
Alignment:
Q  1 catgcatggacaaattaagctagaatctct 30  Q
    ||||||||||||||||||||||||||||||    
T  15070955 catgcatggacaaattaagctagaatctct 15070984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University