View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0595_low_2 (Length: 545)
Name: NF0595_low_2
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0595_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 153 - 536
Target Start/End: Complemental strand, 29612292 - 29611902
Alignment:
| Q |
153 |
gtgtttgtatgaggggattttatgacctaatatatgtaatttaaaaaagtgattcactggttaagaatgagctagaaacctacaagctagaaggaacaga |
252 |
Q |
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| T |
29612292 |
gtgtttgtatgaggggattttatgacctaatatatgtaatttaaaaaagtgattcactggttaagaatgagctagaaacctacaagctagaaggaacaga |
29612193 |
T |
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| Q |
253 |
aaccaaaaacctcaatttgtactcaccgttgattgtaatcccaagt--------attgactt-cttgaaaaagcagggaacgaatgtgtgtaggggtgca |
343 |
Q |
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| T |
29612192 |
aaccaaaaacctcaatttgtactcaccgttgattgtggtcccaagtgattcagtaatgattgacttgaaaaagcagggaacgaatctgtgtagtagtgca |
29612093 |
T |
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| Q |
344 |
gttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgtaggtagttagaagttaattatgattagatggaagttt |
443 |
Q |
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| T |
29612092 |
gttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgtttaggtagttagaagttaattatgattagatggaagttt |
29611995 |
T |
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| Q |
444 |
attatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcatct |
536 |
Q |
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| T |
29611994 |
attatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcatct |
29611902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 419 - 508
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
419 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
508 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 410 - 508
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
410 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
508 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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