View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0595_low_4 (Length: 497)
Name: NF0595_low_4
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0595_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 19549761 - 19550163
Alignment:
| Q |
1 |
tctctggaacaataagaacctcggtttgaatcaaattaggcatcctcttaaacctcaaccgccttcgaaattctcttgaatcattctgagtttcaatttc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19549761 |
tctctggaacaataagaacctctgtttgaatcaaattaggcatcctcttaaacctcaaccgccttcgaaattctcttgaatcattctgagtttcgatttc |
19549860 |
T |
|
| Q |
101 |
gacatcttcaactaacatttgaccaacatgagaactaagacattgatgtataactaaactagaaattaaactatcttcataactcaaaatgggtatgtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
19549861 |
gacatcttcaactaacatttgaccaacatgagaactaagacattgatttataactagactagaaattaaattatcttcataactcaaaatgggtatatca |
19549960 |
T |
|
| Q |
201 |
ggtaaggcgccatttgaaaacaaagatttaggagacaaagcaagaagaagaggtttagaccaaatgtgaaattgttgatgaagcaatgaagaattgaatg |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19549961 |
ggtaaggcgccatttgaaaaaaaagatttaggagacaaagcaagaagaagaggtttagaccaaatgtgaaattgttgatgaagcaatgaagaattgaatg |
19550060 |
T |
|
| Q |
301 |
gacgatggtaaatatgtttagaagaatgagggttaataccaatgagaatgaaacgggaaattgggtgtggagaagagaagagaagttgaagatgacctga |
400 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19550061 |
gacgatggtaaatatgtttagaagaatgagggtttagaccaatgagaatgaaacgggaaattgggtgtggagaagagaagagaagttgaagatgacctga |
19550160 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
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||| |
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| T |
19550161 |
ttg |
19550163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 25079976 - 25080011
Alignment:
| Q |
225 |
gatttaggagacaaagcaagaagaagaggtttagac |
260 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
25079976 |
gatttaggagacaaagctagaagaagaggtttagac |
25080011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 25137945 - 25137980
Alignment:
| Q |
225 |
gatttaggagacaaagcaagaagaagaggtttagac |
260 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
25137945 |
gatttaggagacaaagctagaagaagaggtttagac |
25137980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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