View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0595_low_6 (Length: 423)
Name: NF0595_low_6
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0595_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 32378943 - 32378714
Alignment:
| Q |
30 |
agatttcacaaattgatggaannnnnnnnngcttaaatgcactttttgattccctattttcaccgataattgattttagccccctatttctaaattcgaa |
129 |
Q |
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| T |
32378943 |
agatttcacaaattgatggaatttttttttgcttaaatgcactttttgattccctattttcaccgataattgattttagtcccctatttctaaattcgaa |
32378844 |
T |
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| Q |
130 |
aatgtggtcccaaattttttaaatttcagaagtttcttccactgaatatgagacttattcttgttgatgtgtcaagtgccaagttgaataatgagctgta |
229 |
Q |
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| T |
32378843 |
aatatggtcccaaattttttaaattccagaagtttcttccactgaatatgagacttattcttgttgatgtgtcaagtgccaagttgaataatgagctgta |
32378744 |
T |
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| Q |
230 |
aagtcactgagcgatgtggcgatgcttatt |
259 |
Q |
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| T |
32378743 |
aagtcactgagcgatgtggtgatgcttatt |
32378714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 32378638 - 32378566
Alignment:
| Q |
336 |
ataacatggaaatcaaaataataagattcaatccatgtatgtaatgtcacatcactttgtggcttgtcagtat |
408 |
Q |
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| T |
32378638 |
ataacatggaaattaaaataataagattcaatccatgtatgtaatgtcacatcactttgtggcatgtcagtat |
32378566 |
T |
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